Variant report

Variant	rs1379767
Chromosome Location	chr12:41801294-41801295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10506193	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880089	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880091	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880093	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880095	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10880096	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180853	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs11180882	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs11180899	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11180979	1.00[CHB][hapmap]
rs11180980	1.00[JPT][hapmap]
rs11180981	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11180984	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12227680	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12229610	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12230775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12427081	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs1350431	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs1458169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[ASN][1000 genomes]
rs1527087	0.89[YRI][hapmap]
rs1551594	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs1589983	0.95[CEU][hapmap];1.00[CHB][hapmap]
rs17129291	0.95[CEU][hapmap]
rs1902908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2054211	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2733272	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[ASN][1000 genomes]
rs2733273	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[ASN][1000 genomes]
rs2733294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs285586	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs285587	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3110389	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6582333	0.89[YRI][hapmap]
rs66562278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67859259	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974539	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv899036	chr12:41777144-41807859	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv899037	chr12:41777144-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv1044910	chr12:41778831-41813198	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
6	esv2761735	chr12:41780758-41811938	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
7	esv2757501	chr12:41780758-41816002	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
8	esv2759896	chr12:41780758-41816002	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
9	esv2755020	chr12:41780758-41820936	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
10	nsv899038	chr12:41784137-41819215	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
11	nsv818915	chr12:41784997-41811063	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
12	nsv899039	chr12:41784997-41813207	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a
13	nsv1050627	chr12:41789891-41809009	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41800600-41801600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:41800600-41801800	Enhancers	Fetal Brain Female	brain
3	chr12:41800600-41802200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr12:41800800-41801400	Flanking Active TSS	Brain Angular Gyrus	brain
5	chr12:41800800-41801600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:41801000-41801400	Flanking Active TSS	Brain Hippocampus Middle	brain
7	chr12:41801000-41801400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
8	chr12:41801000-41801800	Flanking Active TSS	Brain Cingulate Gyrus	brain
9	chr12:41801200-41801400	Active TSS	Brain Anterior Caudate	brain
10	chr12:41801200-41801400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr12:41801200-41801400	Flanking Active TSS	Fetal Brain Male	brain
12	chr12:41801200-41801600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr12:41801200-41801600	Flanking Active TSS	Brain Germinal Matrix	brain
14	chr12:41801200-41801600	Active TSS	Brain Substantia Nigra	brain

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