Variant report
| Variant | rs1589983 |
|---|---|
| Chromosome Location | chr12:41775212-41775213 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10506193 | 1.00[CHB][hapmap] |
| rs10880089 | 1.00[CHB][hapmap] |
| rs10880091 | 1.00[CHB][hapmap] |
| rs10880093 | 1.00[CHB][hapmap] |
| rs10880095 | 1.00[CHB][hapmap] |
| rs10880096 | 1.00[CHB][hapmap] |
| rs11180839 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11180853 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11180882 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11180979 | 1.00[CHB][hapmap] |
| rs11180981 | 1.00[CHB][hapmap] |
| rs11180984 | 1.00[CHB][hapmap] |
| rs12227680 | 1.00[CHB][hapmap] |
| rs12229610 | 1.00[CHB][hapmap] |
| rs12230775 | 1.00[CHB][hapmap] |
| rs12305125 | 1.00[JPT][hapmap] |
| rs12305252 | 1.00[JPT][hapmap] |
| rs12307937 | 1.00[JPT][hapmap] |
| rs12317394 | 1.00[JPT][hapmap] |
| rs12427081 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1350431 | 1.00[CHB][hapmap] |
| rs1379767 | 0.95[CEU][hapmap];1.00[CHB][hapmap] |
| rs1458169 | 1.00[CHB][hapmap] |
| rs1551594 | 1.00[CHB][hapmap] |
| rs17129202 | 1.00[JPT][hapmap] |
| rs17129291 | 1.00[CEU][hapmap] |
| rs1902908 | 1.00[CHB][hapmap] |
| rs1918231 | 1.00[JPT][hapmap] |
| rs2054211 | 1.00[CHB][hapmap] |
| rs2733272 | 1.00[CHB][hapmap] |
| rs2733273 | 1.00[CHB][hapmap] |
| rs2733294 | 1.00[CHB][hapmap] |
| rs285586 | 1.00[CHB][hapmap] |
| rs285587 | 1.00[CHB][hapmap] |
| rs3110389 | 1.00[CHB][hapmap] |
| rs3858730 | 1.00[JPT][hapmap] |
| rs4768004 | 1.00[JPT][hapmap] |
| rs7486754 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832383 | chr12:41693298-41846934 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 2 | nsv832384 | chr12:41772648-41971430 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
