Variant report
| Variant | rs1918231 |
|---|---|
| Chromosome Location | chr12:41711669-41711670 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11180567 | 1.00[JPT][hapmap] |
| rs11180586 | 1.00[JPT][hapmap] |
| rs11180587 | 1.00[JPT][hapmap] |
| rs11180626 | 1.00[JPT][hapmap] |
| rs11180646 | 1.00[JPT][hapmap] |
| rs11180853 | 1.00[JPT][hapmap] |
| rs11180882 | 1.00[JPT][hapmap] |
| rs12296962 | 1.00[JPT][hapmap] |
| rs12297322 | 1.00[JPT][hapmap] |
| rs12300590 | 1.00[JPT][hapmap] |
| rs12300840 | 1.00[JPT][hapmap] |
| rs12300953 | 1.00[JPT][hapmap] |
| rs12302094 | 1.00[JPT][hapmap] |
| rs12305125 | 1.00[JPT][hapmap] |
| rs12305252 | 1.00[JPT][hapmap] |
| rs12307937 | 1.00[JPT][hapmap] |
| rs12310793 | 1.00[JPT][hapmap] |
| rs12315362 | 1.00[JPT][hapmap] |
| rs12315979 | 1.00[JPT][hapmap] |
| rs12317394 | 1.00[JPT][hapmap] |
| rs12427081 | 1.00[JPT][hapmap] |
| rs1367606 | 1.00[JPT][hapmap] |
| rs1431126 | 1.00[JPT][hapmap] |
| rs1589983 | 1.00[JPT][hapmap] |
| rs17129202 | 1.00[JPT][hapmap] |
| rs17129211 | 1.00[JPT][hapmap] |
| rs2082222 | 1.00[JPT][hapmap] |
| rs2217492 | 1.00[JPT][hapmap] |
| rs3858730 | 1.00[JPT][hapmap] |
| rs4768004 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73122886 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7486754 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv497867 | chr12:41286305-41728650 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv832383 | chr12:41693298-41846934 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
