Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:41994793..41997112-chr12:42000888..42003362,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10506197	0.84[ASN][1000 genomes]
rs12298745	0.83[ASN][1000 genomes]
rs12301166	0.84[ASN][1000 genomes]
rs12302002	0.86[ASN][1000 genomes]
rs12310013	0.84[ASN][1000 genomes]
rs12310084	0.84[ASN][1000 genomes]
rs12312056	0.86[ASN][1000 genomes]
rs12315016	0.81[ASN][1000 genomes]
rs12318755	0.93[ASN][1000 genomes]
rs17129513	0.83[ASN][1000 genomes]
rs285547	0.84[ASN][1000 genomes]
rs285548	0.84[ASN][1000 genomes]
rs285549	0.84[ASN][1000 genomes]
rs285550	0.84[ASN][1000 genomes]
rs60472195	0.93[ASN][1000 genomes]
rs7300778	0.83[ASN][1000 genomes]
rs7313050	0.84[ASN][1000 genomes]
rs7313159	0.84[ASN][1000 genomes]
rs7314452	0.83[ASN][1000 genomes]
rs7957487	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7957505	0.96[ASN][1000 genomes]
rs7968093	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9652047	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41993200-41999000	Weak transcription	H9 Cell Line	embryonic stem cell

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