Variant report

Variant	rs12318755
Chromosome Location	chr12:41979843-41979844
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10506197	0.81[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs11181050	0.93[ASN][1000 genomes]
rs12298745	0.87[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs12301166	0.87[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs12302002	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12310013	0.88[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.86[LWK][hapmap];0.82[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12310084	0.87[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs12312056	0.91[ASN][1000 genomes]
rs12315016	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17129513	0.88[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs285547	0.82[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs285548	0.88[ASN][1000 genomes]
rs285549	0.87[CHB][hapmap];0.92[CHD][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs285550	0.88[CHB][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs60472195	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7300778	0.90[ASN][1000 genomes]
rs7313050	0.88[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs7313159	0.88[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.92[JPT][hapmap];0.88[ASN][1000 genomes]
rs7314452	0.87[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs7957487	0.95[ASN][1000 genomes]
rs7957505	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7966799	0.82[GIH][hapmap];0.86[LWK][hapmap];0.82[AFR][1000 genomes]
rs7968093	0.95[ASN][1000 genomes]
rs9652047	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41977000-41981200	Weak transcription	Colon Smooth Muscle	Colon

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