Variant report
| Variant | rs11181173 |
|---|---|
| Chromosome Location | chr12:42218568-42218569 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10160908 | 1.00[EUR][1000 genomes] |
| rs10161331 | 1.00[EUR][1000 genomes] |
| rs11181182 | 1.00[EUR][1000 genomes] |
| rs11181198 | 1.00[EUR][1000 genomes] |
| rs11181221 | 1.00[EUR][1000 genomes] |
| rs12296527 | 1.00[EUR][1000 genomes] |
| rs12297581 | 1.00[EUR][1000 genomes] |
| rs12299795 | 1.00[EUR][1000 genomes] |
| rs12300808 | 1.00[EUR][1000 genomes] |
| rs12302024 | 1.00[EUR][1000 genomes] |
| rs12305879 | 1.00[EUR][1000 genomes] |
| rs12312579 | 1.00[EUR][1000 genomes] |
| rs12313848 | 1.00[EUR][1000 genomes] |
| rs12315281 | 1.00[EUR][1000 genomes] |
| rs12318447 | 1.00[EUR][1000 genomes] |
| rs12318889 | 1.00[EUR][1000 genomes] |
| rs12319280 | 1.00[EUR][1000 genomes] |
| rs56362423 | 1.00[EUR][1000 genomes] |
| rs74077066 | 1.00[EUR][1000 genomes] |
| rs74077068 | 1.00[EUR][1000 genomes] |
| rs74077069 | 1.00[EUR][1000 genomes] |
| rs74077071 | 1.00[EUR][1000 genomes] |
| rs74077072 | 1.00[EUR][1000 genomes] |
| rs74077077 | 1.00[EUR][1000 genomes] |
| rs74077084 | 1.00[EUR][1000 genomes] |
| rs74077091 | 1.00[EUR][1000 genomes] |
| rs74077094 | 1.00[EUR][1000 genomes] |
| rs74077119 | 1.00[EUR][1000 genomes] |
| rs74077120 | 1.00[EUR][1000 genomes] |
| rs74078505 | 1.00[EUR][1000 genomes] |
| rs74078506 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899043 | chr12:42058138-42313665 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899044 | chr12:42058138-42321161 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1047870 | chr12:42158954-42254373 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer | lncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1041975 | chr12:42159517-42254373 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1037646 | chr12:42160758-42254373 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:42208800-42231000 | Weak transcription | Primary hematopoietic stem cells | blood |
