Variant report

Variant	rs74077119
Chromosome Location	chr12:42274566-42274567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10160908	1.00[EUR][1000 genomes]
rs10161331	1.00[EUR][1000 genomes]
rs11181173	1.00[EUR][1000 genomes]
rs11181182	1.00[EUR][1000 genomes]
rs11181198	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11181221	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11181222	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12296527	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12297581	1.00[EUR][1000 genomes]
rs12299795	1.00[EUR][1000 genomes]
rs12300808	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12302024	1.00[EUR][1000 genomes]
rs12305879	1.00[EUR][1000 genomes]
rs12312579	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12313848	1.00[EUR][1000 genomes]
rs12315281	1.00[EUR][1000 genomes]
rs12318447	1.00[EUR][1000 genomes]
rs12318889	1.00[EUR][1000 genomes]
rs12319280	1.00[EUR][1000 genomes]
rs56362423	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74077066	1.00[EUR][1000 genomes]
rs74077068	1.00[EUR][1000 genomes]
rs74077069	1.00[EUR][1000 genomes]
rs74077071	1.00[EUR][1000 genomes]
rs74077072	1.00[EUR][1000 genomes]
rs74077077	1.00[EUR][1000 genomes]
rs74077084	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74077091	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74077094	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74077120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74078505	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74078506	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899046	chr12:42271300-42291928	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42274000-42288200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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