Variant report

Variant	rs11181222
Chromosome Location	chr12:42277870-42277871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11181198	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11181221	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12296527	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12300808	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12312579	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56362423	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077084	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077091	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077094	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077119	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077120	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078505	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078506	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899043	chr12:42058138-42313665	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899044	chr12:42058138-42321161	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899046	chr12:42271300-42291928	Weak transcription ZNF genes & repeats Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42274000-42288200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:42277000-42286200	Weak transcription	Primary hematopoietic stem cells	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links