Variant report

Variant	rs11181333
Chromosome Location	chr12:42506953-42506954
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10785326	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10785327	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10785330	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10880238	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10880239	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10880242	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10880253	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10880254	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11181315	0.81[AMR][1000 genomes]
rs11181330	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3990966	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6582381	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6582382	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6582383	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6582384	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67706143	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7133752	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7135456	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7135595	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7135851	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7136450	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7137522	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7296707	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7297464	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7297971	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7298106	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7305104	0.81[AMR][1000 genomes]
rs7959852	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7964383	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9738145	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9739472	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42471800-42524400	Weak transcription	Esophagus	oesophagus
2	chr12:42474600-42514400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:42474600-42518800	Weak transcription	Brain Anterior Caudate	brain
4	chr12:42476000-42524400	Weak transcription	Gastric	stomach
5	chr12:42476200-42524400	Weak transcription	Pancreas	Pancrea
6	chr12:42476600-42523800	Weak transcription	Hela-S3	cervix
7	chr12:42478600-42511600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr12:42480200-42512000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr12:42483600-42511400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr12:42484400-42524800	Weak transcription	Right Ventricle	heart
11	chr12:42485200-42511600	Weak transcription	NHDF-Ad	bronchial
12	chr12:42485800-42512200	Weak transcription	Brain Angular Gyrus	brain
13	chr12:42486000-42513000	Weak transcription	Aorta	Aorta
14	chr12:42488400-42512000	Weak transcription	Osteobl	bone
15	chr12:42488600-42518600	Weak transcription	Fetal Brain Male	brain
16	chr12:42488800-42511800	Weak transcription	HepG2	liver
17	chr12:42490800-42511200	Weak transcription	HSMM	muscle
18	chr12:42491400-42511200	Weak transcription	A549	lung
19	chr12:42492200-42511400	Weak transcription	Adipose Nuclei	Adipose
20	chr12:42492200-42511600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:42492200-42512400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr12:42492200-42518600	Weak transcription	K562	blood
23	chr12:42492400-42511400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr12:42492400-42511600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr12:42492400-42511600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr12:42492400-42512200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr12:42492400-42512200	Weak transcription	HUVEC	blood vessel
28	chr12:42492600-42511400	Weak transcription	Dnd41	blood
29	chr12:42492600-42511800	Weak transcription	Primary T cells from cord blood	blood
30	chr12:42493000-42511600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr12:42493000-42511600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr12:42493000-42524400	Weak transcription	Brain Substantia Nigra	brain
33	chr12:42493000-42534400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr12:42493200-42511400	Weak transcription	HMEC	breast
35	chr12:42493200-42518400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr12:42493200-42519200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr12:42497200-42518800	Weak transcription	Psoas Muscle	Psoas
38	chr12:42498800-42513000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr12:42499000-42516800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr12:42499200-42512200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr12:42499400-42518800	Weak transcription	Fetal Kidney	kidney
42	chr12:42499800-42508000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr12:42500400-42511200	Weak transcription	Liver	Liver
44	chr12:42500800-42511400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr12:42501000-42518800	Weak transcription	Colon Smooth Muscle	Colon
46	chr12:42501200-42512200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr12:42501400-42511800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr12:42501800-42511400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr12:42502200-42511400	Weak transcription	Primary B cells from cord blood	blood
50	chr12:42502600-42511200	Weak transcription	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links