The 2.0 version of rSNPBase

Variant report

Variant rs11181383
Chromosome Location chr12:42630132-42630133
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:42568800-42630600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr12:42569600-42630800 Weak transcription Colonic Mucosa Colon
3 chr12:42569800-42631000 Weak transcription Gastric stomach
4 chr12:42602400-42630800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr12:42607800-42630600 Weak transcription NHEK skin
6 chr12:42608200-42630600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr12:42609800-42631000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr12:42613600-42631000 Weak transcription Ovary ovary
9 chr12:42613800-42630800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr12:42620400-42630800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr12:42620400-42631000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr12:42620600-42630200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr12:42620600-42630800 Weak transcription Fetal Intestine Small intestine
14 chr12:42620600-42630800 Weak transcription Fetal Stomach stomach
15 chr12:42627200-42630800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
16 chr12:42628000-42631000 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr12:42628200-42630600 Enhancers Primary T helper cells PMA-I stimulated --
18 chr12:42628200-42631000 Enhancers Primary T killer naive cells fromperipheralblood blood
19 chr12:42628400-42630600 Enhancers Liver Liver
20 chr12:42628600-42630400 Enhancers Brain Cingulate Gyrus brain
21 chr12:42628600-42630800 Enhancers Primary T helper naive cells from peripheral blood blood
22 chr12:42628600-42630800 Enhancers Primary T helper naive cells fromperipheralblood blood
23 chr12:42628600-42630800 Enhancers Brain Substantia Nigra brain
24 chr12:42628600-42630800 Enhancers Fetal Heart heart
25 chr12:42628600-42631000 Enhancers Primary T killer memory cells from peripheral blood blood
26 chr12:42628600-42631000 Weak transcription Esophagus oesophagus
27 chr12:42628600-42631200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
28 chr12:42628800-42630200 Transcr. at gene 5' and 3' A549 lung
29 chr12:42628800-42630600 Enhancers Brain Hippocampus Middle brain
30 chr12:42628800-42630800 Enhancers HepG2 liver
31 chr12:42628800-42631000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
32 chr12:42629000-42630200 Enhancers Fetal Brain Male brain
33 chr12:42629000-42630800 Weak transcription Fetal Muscle Leg muscle
34 chr12:42629000-42631000 Enhancers Colon Smooth Muscle Colon
35 chr12:42629000-42631000 Weak transcription Fetal Muscle Trunk muscle
36 chr12:42629200-42630600 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr12:42629200-42630600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr12:42629200-42631000 Weak transcription Stomach Mucosa stomach
39 chr12:42629200-42633000 Active TSS Pancreatic Islets Pancreatic Islet
40 chr12:42629400-42630200 Transcr. at gene 5' and 3' hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr12:42629400-42630200 Genic enhancers Hela-S3 cervix
42 chr12:42629400-42630200 Weak transcription NH-A brain
43 chr12:42629400-42630400 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
44 chr12:42629400-42630400 Enhancers Primary mononuclear cells fromperipheralblood Blood
45 chr12:42629400-42630400 Enhancers HUVEC blood vessel
46 chr12:42629400-42630600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr12:42629400-42630800 Enhancers Primary T helper cells fromperipheralblood blood
48 chr12:42629400-42631000 Enhancers Primary T helper 17 cells PMA-I stimulated --
49 chr12:42629400-42631000 Enhancers Fetal Lung lung
50 chr12:42629600-42630200 Weak transcription Cortex derived primary cultured neurospheres brain

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Last update: Aug 31, 2015