The 2.0 version of rSNPBase

Variant report

Variant rs7978820
Chromosome Location chr12:42588939-42588940
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:42539800-42607800 Weak transcription Pancreas Pancrea
2 chr12:42547800-42610400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr12:42550600-42615800 Weak transcription Primary T killer memory cells from peripheral blood blood
4 chr12:42552000-42604000 Weak transcription Stomach Smooth Muscle stomach
5 chr12:42552200-42591200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
6 chr12:42552200-42613000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr12:42552400-42620000 Weak transcription Fetal Brain Female brain
8 chr12:42553600-42590000 Weak transcription Primary T helper naive cells fromperipheralblood blood
9 chr12:42554000-42607600 Weak transcription Rectal Smooth Muscle rectum
10 chr12:42554600-42592200 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr12:42555000-42628600 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr12:42555200-42590000 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr12:42555400-42598000 Weak transcription Primary T helper cells PMA-I stimulated --
14 chr12:42556800-42613200 Weak transcription HMEC breast
15 chr12:42557000-42604000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr12:42557200-42606800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr12:42558000-42602400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr12:42563200-42608000 Weak transcription Small Intestine intestine
19 chr12:42568400-42623400 Weak transcription K562 blood
20 chr12:42568600-42607800 Weak transcription Right Ventricle heart
21 chr12:42568800-42630600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr12:42569600-42630800 Weak transcription Colonic Mucosa Colon
23 chr12:42569800-42631000 Weak transcription Gastric stomach
24 chr12:42570800-42589400 Weak transcription HSMMtube muscle
25 chr12:42571400-42591200 Weak transcription Primary hematopoietic stem cells blood
26 chr12:42571400-42597600 Weak transcription Esophagus oesophagus
27 chr12:42571600-42602400 Weak transcription HepG2 liver
28 chr12:42573000-42589400 Weak transcription Duodenum Mucosa Duodenum
29 chr12:42574800-42615600 Weak transcription HUVEC blood vessel
30 chr12:42575400-42591000 Weak transcription Rectal Mucosa Donor 31 rectum
31 chr12:42575600-42590000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr12:42575600-42607800 Weak transcription Brain Angular Gyrus brain
33 chr12:42575600-42628600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
34 chr12:42575800-42607800 Weak transcription Brain Inferior Temporal Lobe brain
35 chr12:42575800-42607800 Weak transcription Brain Substantia Nigra brain
36 chr12:42576000-42591800 Weak transcription Brain Hippocampus Middle brain
37 chr12:42576200-42592400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
38 chr12:42576600-42607800 Weak transcription Brain Anterior Caudate brain
39 chr12:42578000-42606400 Weak transcription Fetal Heart heart
40 chr12:42578400-42591000 Weak transcription Skeletal Muscle Female skeletal muscle
41 chr12:42578800-42603600 Weak transcription Brain Germinal Matrix brain
42 chr12:42579000-42589600 Weak transcription Left Ventricle heart
43 chr12:42579000-42590600 Weak transcription Psoas Muscle Psoas
44 chr12:42579200-42590600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr12:42579200-42606800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr12:42581800-42607800 Weak transcription Ovary ovary
47 chr12:42582000-42596000 Weak transcription NHEK skin
48 chr12:42582200-42602000 Weak transcription Muscle Satellite Cultured Cells --
49 chr12:42582800-42591000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr12:42583800-42606800 Weak transcription HSMM muscle

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Last update: Aug 31, 2015