Variant report

Variant	rs11182492
Chromosome Location	chr12:44824177-44824178
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10467198	0.87[AFR][1000 genomes]
rs11182485	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11182494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11182503	0.87[AFR][1000 genomes]
rs12300006	0.81[AFR][1000 genomes]
rs12304363	0.94[AFR][1000 genomes]
rs12308192	0.87[AFR][1000 genomes]
rs12310486	0.87[AFR][1000 genomes]
rs1493753	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1493757	0.81[AFR][1000 genomes]
rs56009337	0.87[AFR][1000 genomes]
rs57316311	0.81[AFR][1000 genomes]
rs61334019	0.87[AFR][1000 genomes]
rs74085006	0.81[AFR][1000 genomes]
rs74087530	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44821600-44824600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr12:44823000-44824200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:44823400-44839400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:44824000-44825000	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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