Variant report
| Variant | rs12304363 |
|---|---|
| Chromosome Location | chr12:44832661-44832662 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10467198 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11182492 | 0.94[AFR][1000 genomes] |
| rs11182494 | 0.94[AFR][1000 genomes] |
| rs11182503 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12300006 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12301186 | 1.00[AMR][1000 genomes] |
| rs12308192 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12310486 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12311300 | 1.00[AMR][1000 genomes] |
| rs12322750 | 1.00[AMR][1000 genomes] |
| rs1493753 | 0.87[AFR][1000 genomes] |
| rs1493757 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56009337 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57316311 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59907388 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60037016 | 1.00[AMR][1000 genomes] |
| rs60810059 | 1.00[AMR][1000 genomes] |
| rs61334019 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74085006 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74085037 | 1.00[AMR][1000 genomes] |
| rs74085043 | 1.00[AMR][1000 genomes] |
| rs74085152 | 1.00[AMR][1000 genomes] |
| rs74087530 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9971775 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049818 | chr12:44486312-45133783 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:44823400-44839400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
