Variant report

Variant	rs11182620
Chromosome Location	chr12:45119177-45119178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10880664	0.90[ASN][1000 genomes]
rs11182593	0.81[ASN][1000 genomes]
rs11182594	0.85[ASN][1000 genomes]
rs11182600	0.85[ASN][1000 genomes]
rs11182601	0.85[ASN][1000 genomes]
rs11182602	0.85[ASN][1000 genomes]
rs11182605	0.85[ASN][1000 genomes]
rs11182606	0.85[ASN][1000 genomes]
rs11182609	0.85[ASN][1000 genomes]
rs11182610	0.81[ASN][1000 genomes]
rs11182611	0.85[ASN][1000 genomes]
rs11182613	0.85[ASN][1000 genomes]
rs11182614	0.85[ASN][1000 genomes]
rs11182615	0.85[ASN][1000 genomes]
rs11182616	0.85[ASN][1000 genomes]
rs11182619	1.00[ASN][1000 genomes]
rs11182623	0.90[ASN][1000 genomes]
rs11182624	0.90[ASN][1000 genomes]
rs11182625	0.85[ASN][1000 genomes]
rs11182626	0.85[ASN][1000 genomes]
rs11182629	0.90[ASN][1000 genomes]
rs11182632	0.90[ASN][1000 genomes]
rs11182637	0.86[ASN][1000 genomes]
rs11182638	0.86[ASN][1000 genomes]
rs11182643	0.86[ASN][1000 genomes]
rs11182644	0.86[ASN][1000 genomes]
rs11182645	0.86[ASN][1000 genomes]
rs11182646	0.86[ASN][1000 genomes]
rs11182648	0.86[ASN][1000 genomes]
rs11182649	0.86[ASN][1000 genomes]
rs11182651	0.86[ASN][1000 genomes]
rs11182652	0.86[ASN][1000 genomes]
rs11182653	0.82[ASN][1000 genomes]
rs11531203	0.85[ASN][1000 genomes]
rs12227809	0.95[ASN][1000 genomes]
rs12229463	0.85[ASN][1000 genomes]
rs12230951	0.85[ASN][1000 genomes]
rs17094988	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv832394	chr12:45077573-45269305	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1049080	chr12:45097564-45195295	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45080800-45136000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr12:45111800-45120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:45116400-45122200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:45118200-45123600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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