Variant report

Variant	rs11182615
Chromosome Location	chr12:45093635-45093636
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs10880664	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11182546	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11182547	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs11182553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182554	0.90[ASN][1000 genomes]
rs11182555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182564	0.90[ASN][1000 genomes]
rs11182565	0.90[ASN][1000 genomes]
rs11182566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182567	0.85[ASN][1000 genomes]
rs11182568	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182570	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182571	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182573	0.85[ASN][1000 genomes]
rs11182574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182575	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182576	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182577	0.90[ASN][1000 genomes]
rs11182578	0.85[ASN][1000 genomes]
rs11182582	0.85[ASN][1000 genomes]
rs11182583	0.90[ASN][1000 genomes]
rs11182584	0.90[ASN][1000 genomes]
rs11182585	0.90[ASN][1000 genomes]
rs11182587	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11182589	0.90[ASN][1000 genomes]
rs11182591	0.90[ASN][1000 genomes]
rs11182593	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182594	0.82[CHB][hapmap];1.00[ASN][1000 genomes]
rs11182600	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182601	1.00[ASN][1000 genomes]
rs11182602	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182605	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182606	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182609	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182610	1.00[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs11182611	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182613	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182614	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182616	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11182619	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11182620	0.85[ASN][1000 genomes]
rs11182623	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11182626	1.00[CHB][hapmap]
rs11182646	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11182652	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11182653	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11531203	1.00[ASN][1000 genomes]
rs12227198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12227809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12228607	0.91[ASN][1000 genomes]
rs12228891	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12229413	0.90[ASN][1000 genomes]
rs12229463	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12230951	1.00[ASN][1000 genomes]
rs1450555	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1450556	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1452886	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17094988	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1869163	0.81[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4768069	0.85[ASN][1000 genomes]
rs56989457	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57533444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57804181	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59098139	0.85[ASN][1000 genomes]
rs59161217	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60629070	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60933400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61671085	0.85[ASN][1000 genomes]
rs6582510	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6582511	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7131850	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7133504	1.00[AMR][1000 genomes]
rs7134991	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7295485	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7301727	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74081513	0.85[ASN][1000 genomes]
rs74081517	0.81[ASN][1000 genomes]
rs7954476	0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7954828	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7957686	0.89[AMR][1000 genomes]
rs7959316	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7961698	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7965285	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7966932	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7974610	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9739530	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv832394	chr12:45077573-45269305	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45065000-45116000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:45078800-45095600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr12:45080800-45136000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr12:45081400-45115600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr12:45081600-45106800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:45081800-45103000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr12:45083200-45110000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr12:45084800-45096600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr12:45085400-45101000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr12:45085400-45105800	Weak transcription	Fetal Brain Female	brain
11	chr12:45088000-45110800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr12:45089000-45114200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:45089600-45106400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr12:45090600-45110200	Weak transcription	Brain Germinal Matrix	brain
15	chr12:45091200-45110800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr12:45092000-45094000	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr12:45093200-45099800	Weak transcription	Fetal Brain Male	brain

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