Variant report

Variant	rs11183166
Chromosome Location	chr12:46080292-46080293
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:46076355..46077925-chr12:46079443..46081387,2	K562	blood:
2	chr12:46079388..46081475-chr12:46121265..46123613,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273015	Chromatin interaction
ENSG00000189079	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10880841	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10880846	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10880847	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10880848	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10880849	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10880850	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10880851	0.91[EUR][1000 genomes]
rs10880853	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11183173	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183178	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11183179	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11183180	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11183181	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11610813	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11613663	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12318735	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12320114	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12367059	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12424874	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12427001	0.85[EUR][1000 genomes]
rs12427272	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17712083	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17712809	0.94[CEU][hapmap]
rs17774089	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17774927	0.89[CEU][hapmap]
rs183646	0.94[CEU][hapmap]
rs2059405	0.94[CEU][hapmap]
rs2111963	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2160983	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2408436	0.94[CEU][hapmap]
rs247927	0.94[CEU][hapmap]
rs2897910	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35124	0.94[CEU][hapmap]
rs3759404	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4512915	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4514487	0.82[EUR][1000 genomes]
rs4768659	0.85[EUR][1000 genomes]
rs4768660	0.94[CEU][hapmap]
rs4768662	0.94[CEU][hapmap]
rs57267123	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67790232	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73095421	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73095422	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7485654	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899052	chr12:46068394-46175469	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46073000-46080600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:46080000-46080800	Enhancers	Fetal Thymus	thymus
3	chr12:46080200-46080400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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