Variant report

Variant	rs11613663
Chromosome Location	chr12:46090381-46090382
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10880841	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10880846	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880847	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880848	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880849	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880850	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10880851	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10880853	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11183166	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11183173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11183178	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11183179	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11183180	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11183181	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11610813	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12318735	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12320114	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12367059	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12423797	0.85[EUR][1000 genomes]
rs12424874	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12426716	0.85[EUR][1000 genomes]
rs12427001	0.90[EUR][1000 genomes]
rs12427272	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17712083	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17774089	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2111963	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2160983	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2897910	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3759404	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4512915	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4514487	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4768659	0.90[EUR][1000 genomes]
rs4768660	0.85[EUR][1000 genomes]
rs57267123	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67790232	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73095414	0.81[EUR][1000 genomes]
rs73095421	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73095422	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73095489	0.84[EUR][1000 genomes]
rs7485654	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899052	chr12:46068394-46175469	Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	esv32607	chr12:46087430-46097227	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:46083800-46090400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr12:46083800-46090800	Weak transcription	Right Ventricle	heart
3	chr12:46088400-46097400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr12:46089800-46091000	ZNF genes & repeats	Esophagus	oesophagus
5	chr12:46089800-46091200	ZNF genes & repeats	Dnd41	blood
6	chr12:46090200-46091200	ZNF genes & repeats	Spleen	Spleen

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