Variant report

Variant	rs11183899
Chromosome Location	chr12:47741964-47741965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10748469	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10785674	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10785676	0.83[EUR][1000 genomes]
rs10881095	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881097	0.83[EUR][1000 genomes]
rs12302802	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768802	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58058166	0.81[EUR][1000 genomes]
rs6582705	0.83[EUR][1000 genomes]
rs7966682	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7967683	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7969338	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47723200-47742200	Weak transcription	Primary T cells from cord blood	blood
2	chr12:47737400-47748400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr12:47740200-47742400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr12:47740800-47742400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr12:47740800-47742400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr12:47740800-47743000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr12:47740800-47743200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:47740800-47743400	Weak transcription	Osteobl	bone
9	chr12:47741000-47742000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr12:47741000-47742200	Weak transcription	A549	lung
11	chr12:47741000-47742400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr12:47741000-47743000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr12:47741000-47743600	Weak transcription	Stomach Mucosa	stomach
14	chr12:47741200-47742200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr12:47741600-47742200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr12:47741600-47742600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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