Variant report

Variant	rs10881095
Chromosome Location	chr12:47745756-47745757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr12:47745667-47745813	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000257924	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10748469	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10785674	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785676	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881097	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10881099	0.80[ASN][1000 genomes]
rs11183899	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11183919	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12302802	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1421355	0.87[EUR][1000 genomes]
rs4768802	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58058166	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6582705	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7956037	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7966682	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7967683	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7969338	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs886260	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751100	chr12:47541390-47746157	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47737400-47748400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:47742400-47747600	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:47744200-47749000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:47744600-47746000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:47744600-47749200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr12:47744600-47749200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:47744600-47749600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr12:47744600-47749800	Weak transcription	Osteobl	bone
9	chr12:47744600-47753800	Weak transcription	Fetal Thymus	thymus
10	chr12:47744800-47745800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr12:47744800-47746000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:47744800-47746000	Weak transcription	Fetal Brain Male	brain
13	chr12:47744800-47746200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr12:47744800-47747000	Weak transcription	Primary B cells from cord blood	blood
15	chr12:47744800-47749200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr12:47744800-47749200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr12:47744800-47749200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr12:47744800-47749600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr12:47744800-47749800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr12:47745000-47746000	Weak transcription	Primary T cells from cord blood	blood
21	chr12:47745000-47746000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr12:47745000-47746200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr12:47745000-47747200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr12:47745000-47747400	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr12:47745000-47749200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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