Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:47763219..47766043-chr12:47768327..47771310,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10748469	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10785674	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10785676	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10881095	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10881097	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881099	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11183919	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12302802	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1421355	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4768152	0.88[ASN][1000 genomes]
rs4768802	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58058166	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6582705	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6582706	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7297927	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7966682	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7967683	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7969338	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs929225	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9971912	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558785	chr12:47740440-48044011	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47756200-47771000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:47762800-47771800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr12:47763200-47770800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr12:47763200-47772200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr12:47763200-47772200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr12:47766200-47771200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr12:47766600-47772200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:47768200-47770800	Weak transcription	HUVEC	blood vessel

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