Variant report

Variant	rs11184197
Chromosome Location	chr1:105081773-105081774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10881181	0.88[EUR][1000 genomes]
rs11184198	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11184221	0.84[EUR][1000 genomes]
rs1118861	0.89[EUR][1000 genomes]
rs11488067	0.85[EUR][1000 genomes]
rs12742105	0.84[EUR][1000 genomes]
rs2037113	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2203463	0.89[EUR][1000 genomes]
rs2222034	0.89[EUR][1000 genomes]
rs2873456	0.88[EUR][1000 genomes]
rs35439995	0.88[EUR][1000 genomes]
rs4326627	0.89[EUR][1000 genomes]
rs7540893	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2762170	chr1:104817700-105411596	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv872081	chr1:105009637-105455991	Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1011577	chr1:105051002-105115307	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv872082	chr1:105057555-105090576	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv872083	chr1:105062694-105106498	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11184197	GPR88	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:105081600-105082200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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