Variant report

Variant	rs11185764
Chromosome Location	chr10:91339594-91339595
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11185762	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11185770	0.82[CEU][hapmap];0.82[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185771	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185774	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185778	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12354579	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12356743	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12356827	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12357629	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12357638	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12357651	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12357673	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12358972	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17123953	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4934485	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934486	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934489	0.91[CHB][hapmap]
rs57676812	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6586201	0.90[CHB][hapmap]
rs7917591	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs7922797	0.82[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91328200-91347200	Weak transcription	HSMM	muscle
2	chr10:91333200-91344600	Weak transcription	Left Ventricle	heart
3	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:91333400-91351200	Weak transcription	Ovary	ovary
5	chr10:91334400-91351000	Weak transcription	NHLF	lung
6	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
7	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
8	chr10:91335200-91347800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
10	chr10:91335400-91343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:91335400-91347000	Weak transcription	HepG2	liver
12	chr10:91335400-91347600	Weak transcription	Osteobl	bone
13	chr10:91335400-91370800	Weak transcription	A549	lung
14	chr10:91335400-91375600	Weak transcription	NH-A	brain
15	chr10:91335600-91348400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:91336600-91339800	Weak transcription	Fetal Heart	heart
17	chr10:91336600-91347800	Weak transcription	Primary hematopoietic stem cells	blood
18	chr10:91337200-91345000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:91337400-91348000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:91338000-91347800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:91338600-91344800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
23	chr10:91339200-91342000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:91339400-91340000	Enhancers	Liver	Liver
25	chr10:91339400-91347000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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