Variant report

Variant	rs4934489
Chromosome Location	chr10:91369740-91369741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91368563..91370468-chr10:91374797..91376535,2	K562	blood:
2	chr10:91368279..91370647-chr10:91371718..91374272,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11185768	1.00[CHB][hapmap]
rs11185769	1.00[CHB][hapmap]
rs11185770	0.88[CHB][hapmap]
rs11185771	0.86[CHB][hapmap]
rs11185772	0.90[CHB][hapmap]
rs1536311	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1815337	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2182416	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6586201	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586206	0.90[EUR][1000 genomes]
rs6586207	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6586209	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7913346	0.90[EUR][1000 genomes]
rs943126	0.90[EUR][1000 genomes]
rs943131	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv527532	chr10:91368638-91371021	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91370800	Weak transcription	A549	lung
2	chr10:91335400-91375600	Weak transcription	NH-A	brain
3	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
5	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
8	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
9	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
10	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
13	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
14	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr10:91353200-91377000	Weak transcription	Lung	lung
16	chr10:91353600-91369800	Weak transcription	NHDF-Ad	bronchial
17	chr10:91353600-91374000	Weak transcription	HSMM	muscle
18	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:91356800-91372000	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
22	chr10:91357800-91373400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
24	chr10:91358800-91372000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr10:91359200-91373200	Weak transcription	NHLF	lung
26	chr10:91359400-91393000	Weak transcription	NHEK	skin
27	chr10:91359600-91370600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr10:91359800-91373400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:91360000-91374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:91363000-91374800	Weak transcription	Fetal Kidney	kidney
32	chr10:91363200-91371800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:91363200-91371800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr10:91363200-91377000	Weak transcription	Brain Substantia Nigra	brain
35	chr10:91363200-91377000	Weak transcription	Fetal Heart	heart
36	chr10:91363600-91371600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:91364800-91372000	Strong transcription	Dnd41	blood
38	chr10:91365200-91372000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr10:91366000-91371400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:91366000-91371800	Strong transcription	Liver	Liver
41	chr10:91366400-91371800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:91366600-91375200	Weak transcription	HUVEC	blood vessel
43	chr10:91367000-91370600	Weak transcription	Colonic Mucosa	Colon
44	chr10:91367000-91371600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:91367200-91371800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr10:91367200-91372200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:91367400-91372000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:91367600-91371800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr10:91368200-91371800	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr10:91368400-91370400	Strong transcription	Duodenum Mucosa	Duodenum

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