Variant report

Variant	nsv527532
Chromosome Location	chr10:91368638-91371021
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91368279..91370647-chr10:91371718..91374272,2	K562	blood:
2	chr10:91369983..91372122-chr10:91461089..91464056,2	K562	blood:
3	chr10:91369955..91372663-chr10:91402410..91404170,2	K562	blood:
4	chr10:91367420..91369536-chr10:91378534..91381039,2	MCF-7	breast:
5	chr10:91368563..91370468-chr10:91374797..91376535,2	K562	blood:

Variant related genes	Relation type
ENSG00000152782	chromatin interactions
ENSG00000138182	chromatin interactions

Extended variants
information (count: 99 )
Associated
traits (count: 87 )

Variant overlapped rSNPs/rCNVs (count:99 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs10881606	chr10:91368638-91368639	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs570083990	chr10:91368687-91368688	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs7916734	chr10:91368699-91368700	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
4	rs116449782	chr10:91368716-91368717	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs578247976	chr10:91368724-91368725	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs544041983	chr10:91368806-91368807	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs545143822	chr10:91368828-91368829	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs555248029	chr10:91368874-91368875	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189575391	chr10:91368884-91368885	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs181590318	chr10:91368891-91368892	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs564428639	chr10:91368899-91368900	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs143952568	chr10:91368908-91368909	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs34369661	chr10:91368926-91368927	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs560514529	chr10:91368932-91368933	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs574065856	chr10:91368967-91368968	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs529405518	chr10:91368970-91368971	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs186312434	chr10:91368971-91368972	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs528001424	chr10:91368990-91368991	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs191163359	chr10:91368998-91368999	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs34005302	chr10:91369001-91369002	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs531953797	chr10:91369007-91369008	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs551738349	chr10:91369081-91369082	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs117902074	chr10:91369114-91369115	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs552546292	chr10:91369130-91369131	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs180783738	chr10:91369164-91369165	Weak transcription Strong transcription Genic enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs148600921	chr10:91369226-91369227	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs528530777	chr10:91369234-91369235	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs555456355	chr10:91369266-91369267	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs186508293	chr10:91369285-91369286	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs143180889	chr10:91369371-91369372	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs146746911	chr10:91369376-91369377	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs139436661	chr10:91369394-91369395	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs11185787	chr10:91369428-91369429	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs144087721	chr10:91369429-91369430	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs368186448	chr10:91369450-91369451	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs6586200	chr10:91369485-91369486	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs542724463	chr10:91369529-91369530	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs11185788	chr10:91369577-91369578	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs113649069	chr10:91369591-91369592	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs557470433	chr10:91369602-91369603	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs367768315	chr10:91369605-91369606	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs11185789	chr10:91369638-91369639	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
43	rs75763135	chr10:91369644-91369645	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs527956558	chr10:91369712-91369713	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
45	rs150417245	chr10:91369734-91369735	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
46	rs77371091	chr10:91369739-91369740	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
47	rs4934489	chr10:91369740-91369741	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs565635505	chr10:91369752-91369753	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
49	rs568943568	chr10:91369772-91369773	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs7910298	chr10:91369823-91369824	Weak transcription Strong transcription Genic enhancers Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:87)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Wilms tumour	21544195	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Sezary syndrome	18413736	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
T-cell lymphomas	22341440	CNVD

Chromatin state (count:168 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91370800	Weak transcription	A549	lung
2	chr10:91335400-91375600	Weak transcription	NH-A	brain
3	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
7	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
11	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
12	chr10:91352200-91369400	Weak transcription	Aorta	Aorta
13	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:91352600-91369600	Weak transcription	Placenta	Placenta
16	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
17	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
18	chr10:91353200-91369200	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:91353200-91369200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:91353200-91377000	Weak transcription	Lung	lung
22	chr10:91353400-91369200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:91353400-91369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:91353600-91369200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:91353600-91369800	Weak transcription	NHDF-Ad	bronchial
26	chr10:91353600-91374000	Weak transcription	HSMM	muscle
27	chr10:91353800-91369200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:91353800-91369600	Weak transcription	Brain Germinal Matrix	brain
29	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:91356800-91372000	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
33	chr10:91357800-91373400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:91358600-91368800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:91358600-91369400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
37	chr10:91358800-91369200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:91358800-91369600	Weak transcription	Ovary	ovary
39	chr10:91358800-91372000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:91359200-91373200	Weak transcription	NHLF	lung
41	chr10:91359400-91368800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:91359400-91393000	Weak transcription	NHEK	skin
43	chr10:91359600-91369400	Weak transcription	Fetal Brain Female	brain
44	chr10:91359600-91370600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:91359800-91373400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:91360000-91369200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr10:91360000-91369400	Weak transcription	Right Ventricle	heart
49	chr10:91360000-91369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:91360000-91374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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