Variant report

Variant	rs11185787
Chromosome Location	chr10:91369428-91369429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91368563..91370468-chr10:91374797..91376535,2	K562	blood:
2	chr10:91368279..91370647-chr10:91371718..91374272,2	K562	blood:
3	chr10:91367420..91369536-chr10:91378534..91381039,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10748523	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785892	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185789	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536312	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536313	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2148311	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3802654	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802655	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4503438	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6586202	0.80[EUR][1000 genomes]
rs6586204	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586206	0.83[ASN][1000 genomes]
rs7076397	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076537	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7076782	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079690	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087473	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090164	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091402	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091626	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7905270	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907406	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910960	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913346	0.83[ASN][1000 genomes]
rs7916228	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916319	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922727	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943126	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv527532	chr10:91368638-91371021	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91370800	Weak transcription	A549	lung
2	chr10:91335400-91375600	Weak transcription	NH-A	brain
3	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
5	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
8	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
9	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
10	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:91352600-91369600	Weak transcription	Placenta	Placenta
13	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
14	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
15	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr10:91353200-91377000	Weak transcription	Lung	lung
17	chr10:91353600-91369800	Weak transcription	NHDF-Ad	bronchial
18	chr10:91353600-91374000	Weak transcription	HSMM	muscle
19	chr10:91353800-91369600	Weak transcription	Brain Germinal Matrix	brain
20	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:91356800-91372000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
24	chr10:91357800-91373400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
26	chr10:91358800-91369600	Weak transcription	Ovary	ovary
27	chr10:91358800-91372000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:91359200-91373200	Weak transcription	NHLF	lung
29	chr10:91359400-91393000	Weak transcription	NHEK	skin
30	chr10:91359600-91370600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr10:91359800-91373400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:91360000-91369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:91360000-91374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:91363000-91374800	Weak transcription	Fetal Kidney	kidney
36	chr10:91363200-91371800	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr10:91363200-91371800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr10:91363200-91377000	Weak transcription	Brain Substantia Nigra	brain
39	chr10:91363200-91377000	Weak transcription	Fetal Heart	heart
40	chr10:91363600-91371600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr10:91364800-91372000	Strong transcription	Dnd41	blood
42	chr10:91365200-91372000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr10:91366000-91371400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr10:91366000-91371800	Strong transcription	Liver	Liver
45	chr10:91366400-91371800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr10:91366600-91375200	Weak transcription	HUVEC	blood vessel
47	chr10:91367000-91370600	Weak transcription	Colonic Mucosa	Colon
48	chr10:91367000-91371600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:91367200-91371800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr10:91367200-91372200	Strong transcription	Cortex derived primary cultured neurospheres	brain

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