Variant report

Variant	rs2148311
Chromosome Location	chr10:91366369-91366370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91357088..91358823-chr10:91364317..91366919,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10748523	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10748524	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10748525	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10785892	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11185784	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11185787	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11185788	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11185789	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1536312	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1536313	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2148310	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3802654	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3802655	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4503438	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6586204	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7076397	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7076537	0.84[ASN][1000 genomes]
rs7076782	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7077136	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7079690	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7087473	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7090164	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7091402	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7091626	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7905270	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7907406	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7910298	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7910960	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7916228	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7916319	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7921294	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7922727	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91370800	Weak transcription	A549	lung
2	chr10:91335400-91375600	Weak transcription	NH-A	brain
3	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
7	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:91349200-91367600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
11	chr10:91351400-91368600	Weak transcription	Gastric	stomach
12	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
13	chr10:91351800-91368600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
15	chr10:91352200-91369400	Weak transcription	Aorta	Aorta
16	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:91352600-91369600	Weak transcription	Placenta	Placenta
19	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
20	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
21	chr10:91353200-91369200	Weak transcription	Brain Hippocampus Middle	brain
22	chr10:91353200-91369200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr10:91353200-91377000	Weak transcription	Lung	lung
25	chr10:91353400-91369200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr10:91353400-91369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:91353600-91369200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr10:91353600-91369800	Weak transcription	NHDF-Ad	bronchial
29	chr10:91353600-91374000	Weak transcription	HSMM	muscle
30	chr10:91353800-91368600	Weak transcription	Fetal Lung	lung
31	chr10:91353800-91369200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:91353800-91369600	Weak transcription	Brain Germinal Matrix	brain
33	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:91354800-91368600	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:91356600-91368600	Weak transcription	Fetal Brain Male	brain
37	chr10:91356800-91372000	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
39	chr10:91357800-91373400	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr10:91358600-91368800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr10:91358600-91369400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
43	chr10:91358800-91369200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:91358800-91369600	Weak transcription	Ovary	ovary
45	chr10:91358800-91372000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:91359000-91367400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr10:91359200-91367000	Weak transcription	Primary T cells from cord blood	blood
48	chr10:91359200-91368600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:91359200-91373200	Weak transcription	NHLF	lung
50	chr10:91359400-91366800	Weak transcription	GM12878-XiMat	blood

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