Variant report

Variant	rs10785892
Chromosome Location	chr10:91372835-91372836
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr10:91372585-91372900	SH-SY5Y	brain:	n/a	chr10:91372760-91372769 chr10:91372753-91372774 chr10:91372756-91372772

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91368279..91370647-chr10:91371718..91374272,2	K562	blood:
2	chr10:91371070..91374344-chr10:91402272..91406788,6	MCF-7	breast:

Variant related genes	Relation type
PANK1	TF binding region
ENSG00000249962	Chromatin interaction
ENSG00000232936	Chromatin interaction
ENSG00000152782	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10748523	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748524	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748525	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185784	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185787	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185788	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185789	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536312	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536313	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1555880	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap]
rs2148310	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2148311	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3802654	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802655	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4503438	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6586202	0.80[EUR][1000 genomes]
rs6586204	0.96[CEU][hapmap];0.96[CHB][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586206	0.83[ASN][1000 genomes]
rs7076397	0.96[CEU][hapmap];0.96[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076537	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7076782	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077136	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087473	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090164	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091402	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091626	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs730204	0.83[CEU][hapmap]
rs7896079	0.81[YRI][hapmap]
rs7905270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907406	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910298	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910960	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913346	0.83[ASN][1000 genomes]
rs7916228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921294	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922727	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943126	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91375600	Weak transcription	NH-A	brain
2	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
3	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
5	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
6	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
9	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
10	chr10:91353200-91377000	Weak transcription	Lung	lung
11	chr10:91353600-91374000	Weak transcription	HSMM	muscle
12	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
15	chr10:91357800-91373400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
17	chr10:91359200-91373200	Weak transcription	NHLF	lung
18	chr10:91359400-91393000	Weak transcription	NHEK	skin
19	chr10:91359800-91373400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:91360000-91374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:91363000-91374800	Weak transcription	Fetal Kidney	kidney
23	chr10:91363200-91377000	Weak transcription	Brain Substantia Nigra	brain
24	chr10:91363200-91377000	Weak transcription	Fetal Heart	heart
25	chr10:91366600-91375200	Weak transcription	HUVEC	blood vessel
26	chr10:91369600-91374800	Weak transcription	Fetal Thymus	thymus
27	chr10:91369800-91373800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr10:91370000-91373000	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:91370000-91373400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:91370000-91373400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr10:91370000-91374000	Weak transcription	Ovary	ovary
32	chr10:91370000-91375400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:91370000-91380200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr10:91370200-91373400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr10:91370200-91375400	Weak transcription	Fetal Intestine Small	intestine
36	chr10:91370200-91375600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:91370200-91376600	Weak transcription	Osteobl	bone
38	chr10:91370200-91381200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:91370200-91385800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:91370600-91373200	Weak transcription	GM12878-XiMat	blood
42	chr10:91370800-91375600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:91371000-91392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr10:91371400-91373800	Weak transcription	Fetal Brain Male	brain
45	chr10:91371400-91389400	Weak transcription	A549	lung
46	chr10:91371600-91373200	Weak transcription	Brain Angular Gyrus	brain
47	chr10:91371600-91373400	Weak transcription	Brain Germinal Matrix	brain
48	chr10:91371600-91373400	Weak transcription	Fetal Lung	lung
49	chr10:91371600-91373400	Weak transcription	HMEC	breast
50	chr10:91371600-91374000	Weak transcription	Aorta	Aorta

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