Variant report

Variant	rs7896079
Chromosome Location	chr10:91371445-91371446
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10748522	0.83[YRI][hapmap]
rs10748523	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10748524	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10748525	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10785892	0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10881606	0.83[YRI][hapmap]
rs11185784	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11185787	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11185788	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11185789	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11185817	0.94[YRI][hapmap]
rs1409354	0.85[YRI][hapmap]
rs1536312	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1536313	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1555880	0.86[YRI][hapmap]
rs2038921	0.83[YRI][hapmap]
rs2148310	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2148311	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2296616	0.83[YRI][hapmap]
rs3802654	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3802655	0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4313481	0.85[YRI][hapmap]
rs4503438	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6586203	0.95[YRI][hapmap]
rs6586204	0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6586205	0.94[YRI][hapmap]
rs7076397	0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7076537	0.81[EUR][1000 genomes]
rs7076782	0.87[AMR][1000 genomes]
rs7077136	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7079690	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7087473	0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7089984	0.83[YRI][hapmap]
rs7090164	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7091402	0.85[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7091626	0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs728056	0.83[YRI][hapmap]
rs7905270	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7907406	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7910298	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7910960	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7916228	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7916319	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7918120	0.83[YRI][hapmap]
rs7921294	0.80[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7922727	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91375600	Weak transcription	NH-A	brain
2	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
4	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
7	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
8	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
11	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
12	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr10:91353200-91377000	Weak transcription	Lung	lung
14	chr10:91353600-91374000	Weak transcription	HSMM	muscle
15	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:91356800-91372000	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
19	chr10:91357800-91373400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
21	chr10:91358800-91372000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr10:91359200-91373200	Weak transcription	NHLF	lung
23	chr10:91359400-91393000	Weak transcription	NHEK	skin
24	chr10:91359800-91373400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:91360000-91374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:91363000-91374800	Weak transcription	Fetal Kidney	kidney
28	chr10:91363200-91371800	Strong transcription	HUES48 Cell Line	embryonic stem cell
29	chr10:91363200-91371800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:91363200-91377000	Weak transcription	Brain Substantia Nigra	brain
31	chr10:91363200-91377000	Weak transcription	Fetal Heart	heart
32	chr10:91363600-91371600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:91364800-91372000	Strong transcription	Dnd41	blood
34	chr10:91365200-91372000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr10:91366000-91371800	Strong transcription	Liver	Liver
36	chr10:91366400-91371800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr10:91366600-91375200	Weak transcription	HUVEC	blood vessel
38	chr10:91367000-91371600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:91367200-91371800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:91367200-91372200	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:91367400-91372000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr10:91367600-91371800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr10:91368200-91371800	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:91368400-91371800	Strong transcription	HepG2	liver
45	chr10:91368600-91371600	Strong transcription	Primary hematopoietic stem cells	blood
46	chr10:91368600-91371600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr10:91368600-91371600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr10:91368600-91371600	Strong transcription	Fetal Lung	lung
49	chr10:91368600-91371600	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:91368600-91371800	Strong transcription	H9 Cell Line	embryonic stem cell

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