Variant report

Variant	rs728056
Chromosome Location	chr10:91359987-91359988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10748522	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785889	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10785890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10881605	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10881606	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11185766	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185785	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11185803	0.89[ASN][1000 genomes]
rs11185807	0.89[ASN][1000 genomes]
rs11185813	0.89[ASN][1000 genomes]
rs11185814	0.89[ASN][1000 genomes]
rs11185815	0.89[ASN][1000 genomes]
rs11185817	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs11592441	0.89[ASN][1000 genomes]
rs1409354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038921	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296616	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34369661	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4313481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586203	1.00[CHB][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs6586205	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes]
rs7076277	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077162	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077189	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089984	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893156	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896079	0.83[YRI][hapmap]
rs7900297	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901886	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7903124	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905082	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907626	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918120	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91370800	Weak transcription	A549	lung
2	chr10:91335400-91375600	Weak transcription	NH-A	brain
3	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
7	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:91349200-91367600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:91350800-91363200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr10:91351000-91360800	Weak transcription	Thymus	Thymus
12	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
13	chr10:91351400-91368600	Weak transcription	Gastric	stomach
14	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
15	chr10:91351800-91362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:91351800-91368600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
18	chr10:91352200-91369400	Weak transcription	Aorta	Aorta
19	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:91352600-91361000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr10:91352600-91369600	Weak transcription	Placenta	Placenta
23	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
24	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
25	chr10:91353200-91369200	Weak transcription	Brain Hippocampus Middle	brain
26	chr10:91353200-91369200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:91353200-91377000	Weak transcription	Lung	lung
29	chr10:91353400-91369200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:91353400-91369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr10:91353600-91360000	Weak transcription	Osteobl	bone
32	chr10:91353600-91366000	Weak transcription	HMEC	breast
33	chr10:91353600-91369200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:91353600-91369800	Weak transcription	NHDF-Ad	bronchial
35	chr10:91353600-91374000	Weak transcription	HSMM	muscle
36	chr10:91353800-91368600	Weak transcription	Fetal Lung	lung
37	chr10:91353800-91369200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:91353800-91369600	Weak transcription	Brain Germinal Matrix	brain
39	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:91354800-91360000	Weak transcription	Fetal Heart	heart
41	chr10:91354800-91368600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:91355600-91361200	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr10:91356000-91360400	Strong transcription	Dnd41	blood
45	chr10:91356200-91361000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr10:91356600-91368600	Weak transcription	Fetal Brain Male	brain
47	chr10:91356800-91372000	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
49	chr10:91357000-91361200	Strong transcription	HepG2	liver
50	chr10:91357000-91362200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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