Variant report

Variant	rs7077162
Chromosome Location	chr10:91340671-91340672
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91340078..91341868-chr10:91467795..91469840,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10748522	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785889	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10785890	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10881605	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10881606	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs11185766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185785	0.89[ASN][1000 genomes]
rs11185803	0.89[ASN][1000 genomes]
rs11185807	0.89[ASN][1000 genomes]
rs11185813	0.89[ASN][1000 genomes]
rs11185814	0.89[ASN][1000 genomes]
rs11185815	0.89[ASN][1000 genomes]
rs11185817	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs11592441	0.89[ASN][1000 genomes]
rs1409354	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038921	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296616	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34369661	0.89[ASN][1000 genomes]
rs4313481	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586203	1.00[CHB][hapmap];0.91[YRI][hapmap];0.89[ASN][1000 genomes]
rs6586205	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs7076277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077189	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7089984	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728056	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893156	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896079	0.85[YRI][hapmap]
rs7900297	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901886	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7903124	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905082	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907626	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7908686	0.81[EUR][1000 genomes]
rs7918120	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91328200-91347200	Weak transcription	HSMM	muscle
2	chr10:91333200-91344600	Weak transcription	Left Ventricle	heart
3	chr10:91333400-91348400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:91333400-91351200	Weak transcription	Ovary	ovary
5	chr10:91334400-91351000	Weak transcription	NHLF	lung
6	chr10:91334400-91351200	Weak transcription	Fetal Stomach	stomach
7	chr10:91334400-91352800	Weak transcription	Fetal Lung	lung
8	chr10:91335200-91347800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:91335200-91352200	Weak transcription	NHDF-Ad	bronchial
10	chr10:91335400-91343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:91335400-91347000	Weak transcription	HepG2	liver
12	chr10:91335400-91347600	Weak transcription	Osteobl	bone
13	chr10:91335400-91370800	Weak transcription	A549	lung
14	chr10:91335400-91375600	Weak transcription	NH-A	brain
15	chr10:91335600-91348400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:91336600-91347800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr10:91337200-91345000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:91337400-91348000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr10:91338000-91347800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:91338600-91344800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:91339000-91351600	Weak transcription	Aorta	Aorta
22	chr10:91339200-91342000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:91339400-91347000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:91339800-91341200	Enhancers	Fetal Heart	heart
25	chr10:91339800-91342000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:91340000-91351200	Weak transcription	Placenta	Placenta
27	chr10:91340200-91352400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:91340400-91340800	Enhancers	Fetal Intestine Large	intestine
29	chr10:91340400-91342200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:91340400-91342200	Weak transcription	Liver	Liver
31	chr10:91340600-91342200	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:91340600-91344800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:91340600-91352400	Weak transcription	Fetal Muscle Leg	muscle

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