Variant report

Variant	rs6586203
Chromosome Location	chr10:91373994-91373995
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91368279..91370647-chr10:91371718..91374272,2	K562	blood:
2	chr10:91371070..91374344-chr10:91402272..91406788,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232936	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000152782	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10748522	1.00[CHB][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs10785889	0.86[ASN][1000 genomes]
rs10881606	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185766	0.89[ASN][1000 genomes]
rs11185785	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185803	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185807	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185813	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185814	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185815	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592441	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409354	1.00[CHB][hapmap];0.91[YRI][hapmap];0.89[ASN][1000 genomes]
rs2038921	1.00[CHB][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs2296616	1.00[CHB][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs34369661	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4313481	1.00[CHB][hapmap];0.91[YRI][hapmap];0.89[ASN][1000 genomes]
rs6586205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076277	0.89[ASN][1000 genomes]
rs7077162	0.89[ASN][1000 genomes]
rs7077189	0.89[ASN][1000 genomes]
rs7089984	1.00[CHB][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs728056	1.00[CHB][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs7893156	0.89[ASN][1000 genomes]
rs7896079	0.95[YRI][hapmap]
rs7900297	0.89[ASN][1000 genomes]
rs7903124	0.89[ASN][1000 genomes]
rs7905082	0.89[ASN][1000 genomes]
rs7907626	0.89[ASN][1000 genomes]
rs7918120	1.00[CHB][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91375600	Weak transcription	NH-A	brain
2	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
3	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
4	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
5	chr10:91353200-91377000	Weak transcription	Lung	lung
6	chr10:91353600-91374000	Weak transcription	HSMM	muscle
7	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
10	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
11	chr10:91359400-91393000	Weak transcription	NHEK	skin
12	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:91360000-91374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr10:91363000-91374800	Weak transcription	Fetal Kidney	kidney
15	chr10:91363200-91377000	Weak transcription	Brain Substantia Nigra	brain
16	chr10:91363200-91377000	Weak transcription	Fetal Heart	heart
17	chr10:91366600-91375200	Weak transcription	HUVEC	blood vessel
18	chr10:91369600-91374800	Weak transcription	Fetal Thymus	thymus
19	chr10:91370000-91374000	Weak transcription	Ovary	ovary
20	chr10:91370000-91375400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr10:91370000-91380200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:91370200-91375400	Weak transcription	Fetal Intestine Small	intestine
23	chr10:91370200-91375600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:91370200-91376600	Weak transcription	Osteobl	bone
25	chr10:91370200-91381200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:91370200-91385800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:91370800-91375600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:91371000-91392800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:91371400-91389400	Weak transcription	A549	lung
31	chr10:91371600-91374000	Weak transcription	Aorta	Aorta
32	chr10:91371600-91374600	Weak transcription	Primary T cells from cord blood	blood
33	chr10:91371600-91375000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:91371600-91375400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:91371600-91375600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr10:91371600-91375600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:91371600-91376200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr10:91371600-91376600	Weak transcription	Fetal Brain Female	brain
39	chr10:91371600-91376800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:91371600-91377000	Weak transcription	Right Ventricle	heart
41	chr10:91371600-91378000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:91371600-91378000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr10:91371600-91378400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:91371600-91378400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:91371800-91374400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr10:91371800-91375000	Weak transcription	Fetal Intestine Large	intestine
47	chr10:91371800-91375600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr10:91371800-91375600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:91371800-91375600	Weak transcription	NHDF-Ad	bronchial
50	chr10:91371800-91376800	Weak transcription	Left Ventricle	heart

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