Variant report

Variant	rs10881606
Chromosome Location	chr10:91368638-91368639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91368563..91370468-chr10:91374797..91376535,2	K562	blood:
2	chr10:91368279..91370647-chr10:91371718..91374272,2	K562	blood:
3	chr10:91367420..91369536-chr10:91378534..91381039,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10748522	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10785889	0.86[ASN][1000 genomes]
rs10785890	0.87[AFR][1000 genomes]
rs11185766	0.89[ASN][1000 genomes]
rs11185785	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185803	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185807	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185813	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185814	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185815	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592441	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1409354	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2038921	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs2296616	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.89[ASN][1000 genomes]
rs34369661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802655	0.84[LWK][hapmap]
rs4313481	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6586203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586205	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076277	0.89[ASN][1000 genomes]
rs7077162	0.89[ASN][1000 genomes]
rs7077189	0.89[ASN][1000 genomes]
rs7087473	0.84[LWK][hapmap]
rs7089984	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7091402	0.84[LWK][hapmap]
rs728056	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.94[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7893156	0.89[ASN][1000 genomes]
rs7896079	0.83[YRI][hapmap]
rs7900297	0.89[ASN][1000 genomes]
rs7903124	0.89[ASN][1000 genomes]
rs7905082	0.89[ASN][1000 genomes]
rs7907626	0.89[ASN][1000 genomes]
rs7918120	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7921294	0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv527532	chr10:91368638-91371021	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10881606	PCGF5	cis	cerebellum	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91370800	Weak transcription	A549	lung
2	chr10:91335400-91375600	Weak transcription	NH-A	brain
3	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
7	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
11	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
12	chr10:91352200-91369400	Weak transcription	Aorta	Aorta
13	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:91352600-91369600	Weak transcription	Placenta	Placenta
16	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
17	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
18	chr10:91353200-91369200	Weak transcription	Brain Hippocampus Middle	brain
19	chr10:91353200-91369200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:91353200-91377000	Weak transcription	Lung	lung
22	chr10:91353400-91369200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr10:91353400-91369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr10:91353600-91369200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr10:91353600-91369800	Weak transcription	NHDF-Ad	bronchial
26	chr10:91353600-91374000	Weak transcription	HSMM	muscle
27	chr10:91353800-91369200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:91353800-91369600	Weak transcription	Brain Germinal Matrix	brain
29	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr10:91356800-91372000	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
33	chr10:91357800-91373400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr10:91358600-91368800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:91358600-91369400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
37	chr10:91358800-91369200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr10:91358800-91369600	Weak transcription	Ovary	ovary
39	chr10:91358800-91372000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr10:91359200-91373200	Weak transcription	NHLF	lung
41	chr10:91359400-91368800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr10:91359400-91393000	Weak transcription	NHEK	skin
43	chr10:91359600-91369400	Weak transcription	Fetal Brain Female	brain
44	chr10:91359600-91370600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr10:91359800-91373400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr10:91360000-91369200	Weak transcription	Stomach Smooth Muscle	stomach
48	chr10:91360000-91369400	Weak transcription	Right Ventricle	heart
49	chr10:91360000-91369600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr10:91360000-91374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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