Variant report

Variant	rs10748522
Chromosome Location	chr10:91355879-91355880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:91355860-91356010	HBMEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91351704..91354724-chr10:91355204..91356961,3	K562	blood:

Variant related genes	Relation type
MIR107	TF binding region
ENSG00000198997	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10785889	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10785890	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10881605	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10881606	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11185766	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185785	0.89[ASN][1000 genomes]
rs11185803	0.89[ASN][1000 genomes]
rs11185807	0.89[ASN][1000 genomes]
rs11185813	0.89[ASN][1000 genomes]
rs11185814	0.89[ASN][1000 genomes]
rs11185815	0.89[ASN][1000 genomes]
rs11185817	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs11592441	0.89[ASN][1000 genomes]
rs1409354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2038921	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296616	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34369661	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs3802655	0.84[LWK][hapmap]
rs4313481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586203	1.00[CHB][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs6586205	1.00[CHB][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes]
rs7076277	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077162	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077189	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087473	0.84[LWK][hapmap]
rs7089984	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091402	0.84[LWK][hapmap]
rs728056	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7893156	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896079	0.83[YRI][hapmap]
rs7900297	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7901886	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7903124	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905082	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907626	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7918120	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921294	0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91370800	Weak transcription	A549	lung
2	chr10:91335400-91375600	Weak transcription	NH-A	brain
3	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
4	chr10:91343400-91369200	Weak transcription	Brain Angular Gyrus	brain
5	chr10:91344000-91369200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
7	chr10:91346400-91357800	Weak transcription	Fetal Kidney	kidney
8	chr10:91346400-91358000	Weak transcription	Fetal Brain Female	brain
9	chr10:91347000-91359200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:91348800-91358000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:91349200-91367600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:91349400-91357600	Weak transcription	HSMMtube	muscle
14	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:91350200-91359800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr10:91350800-91363200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr10:91351000-91360800	Weak transcription	Thymus	Thymus
18	chr10:91351000-91371200	Weak transcription	Brain Anterior Caudate	brain
19	chr10:91351400-91368600	Weak transcription	Gastric	stomach
20	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
21	chr10:91351800-91358400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:91351800-91362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr10:91351800-91368600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
25	chr10:91352000-91357200	Weak transcription	Psoas Muscle	Psoas
26	chr10:91352000-91357800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:91352200-91357800	Weak transcription	NHLF	lung
28	chr10:91352200-91358200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr10:91352200-91358400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:91352200-91369400	Weak transcription	Aorta	Aorta
31	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr10:91352400-91357000	Weak transcription	HepG2	liver
34	chr10:91352400-91357800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:91352600-91357800	Weak transcription	Ovary	ovary
36	chr10:91352600-91358400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr10:91352600-91361000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr10:91352600-91369600	Weak transcription	Placenta	Placenta
39	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
40	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
41	chr10:91352800-91356200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:91353000-91357400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr10:91353200-91358400	Weak transcription	Right Ventricle	heart
44	chr10:91353200-91369200	Weak transcription	Brain Hippocampus Middle	brain
45	chr10:91353200-91369200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr10:91353200-91371600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr10:91353200-91377000	Weak transcription	Lung	lung
48	chr10:91353400-91357800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:91353400-91358000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr10:91353400-91358000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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