Variant report

Variant	rs1555880
Chromosome Location	chr10:91371958-91371959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10748523	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748524	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10748525	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785892	0.96[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185784	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11185787	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185788	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11185789	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1536313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148310	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2148311	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3802654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802655	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4503438	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6586202	0.80[EUR][1000 genomes]
rs6586204	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6586206	0.83[ASN][1000 genomes]
rs7076397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076537	0.96[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7076782	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077136	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079690	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087473	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7090164	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.84[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091402	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7091626	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs730204	0.88[CEU][hapmap]
rs7896079	0.86[YRI][hapmap]
rs7905270	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907406	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910298	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7910960	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913346	0.83[ASN][1000 genomes]
rs7916228	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7916319	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7921294	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922727	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943126	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91335400-91375600	Weak transcription	NH-A	brain
2	chr10:91343200-91372600	Weak transcription	Primary B cells from cord blood	blood
3	chr10:91345000-91392800	Weak transcription	Hela-S3	cervix
4	chr10:91348600-91373200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr10:91349400-91372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
7	chr10:91351800-91373200	Weak transcription	Pancreas	Pancrea
8	chr10:91352200-91373200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr10:91352200-91373400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:91352600-91373200	Weak transcription	Adipose Nuclei	Adipose
11	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
12	chr10:91353200-91377000	Weak transcription	Lung	lung
13	chr10:91353600-91374000	Weak transcription	HSMM	muscle
14	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:91354800-91378000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr10:91356800-91372000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:91356800-91378200	Weak transcription	Spleen	Spleen
18	chr10:91357800-91373400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr10:91358600-91377600	Weak transcription	Psoas Muscle	Psoas
20	chr10:91358800-91372000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr10:91359200-91373200	Weak transcription	NHLF	lung
22	chr10:91359400-91393000	Weak transcription	NHEK	skin
23	chr10:91359800-91373400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:91360000-91374600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr10:91363000-91374800	Weak transcription	Fetal Kidney	kidney
27	chr10:91363200-91377000	Weak transcription	Brain Substantia Nigra	brain
28	chr10:91363200-91377000	Weak transcription	Fetal Heart	heart
29	chr10:91364800-91372000	Strong transcription	Dnd41	blood
30	chr10:91365200-91372000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:91366600-91375200	Weak transcription	HUVEC	blood vessel
32	chr10:91367200-91372200	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:91367400-91372000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr10:91368600-91372000	Strong transcription	H1 Cell Line	embryonic stem cell
35	chr10:91368600-91372000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:91369600-91374800	Weak transcription	Fetal Thymus	thymus
37	chr10:91369800-91373800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:91370000-91372600	Weak transcription	Gastric	stomach
39	chr10:91370000-91373000	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:91370000-91373400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr10:91370000-91373400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr10:91370000-91374000	Weak transcription	Ovary	ovary
43	chr10:91370000-91375400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:91370000-91380200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr10:91370200-91372800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:91370200-91373400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:91370200-91375400	Weak transcription	Fetal Intestine Small	intestine
48	chr10:91370200-91375600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr10:91370200-91376600	Weak transcription	Osteobl	bone
50	chr10:91370200-91381200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links