Variant report

Variant	rs11186694
Chromosome Location	chr10:93572984-93572985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93558698..93560238-chr10:93571745..93574194,2	MCF-7	breast:
2	chr10:93567409..93570615-chr10:93572216..93575127,3	MCF-7	breast:
3	chr10:93557959..93559556-chr10:93572514..93574397,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228701	Chromatin interaction
ENSG00000107854	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10881970	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186687	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11186698	0.90[ASN][1000 genomes]
rs11186699	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12359353	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1538831	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1630388	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17347260	0.83[EUR][1000 genomes]
rs1770469	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1770474	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1772187	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2259094	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2259287	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2259659	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2260773	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2261029	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2261035	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3802649	0.90[ASN][1000 genomes]
rs61874701	0.82[EUR][1000 genomes]
rs6583788	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583789	0.84[AMR][1000 genomes]
rs7083959	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7919191	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9420573	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11186694	TNKS2	cis	Thyroid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93559000-93580800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:93559400-93573200	Weak transcription	Esophagus	oesophagus
3	chr10:93559600-93578800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:93559600-93599200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:93560200-93577600	Weak transcription	Colonic Mucosa	Colon
6	chr10:93560200-93589400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:93560400-93573200	Weak transcription	HSMMtube	muscle
8	chr10:93560400-93574400	Weak transcription	NHLF	lung
9	chr10:93560400-93577000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:93560800-93573400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr10:93563400-93580800	Weak transcription	Fetal Stomach	stomach
12	chr10:93563600-93578200	Weak transcription	Aorta	Aorta
13	chr10:93563800-93579400	Weak transcription	Right Atrium	heart
14	chr10:93564000-93573200	Weak transcription	Brain Germinal Matrix	brain
15	chr10:93564000-93579000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:93564600-93576600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:93565400-93574200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:93565800-93573200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr10:93565800-93573200	Weak transcription	Brain Anterior Caudate	brain
20	chr10:93565800-93574400	Weak transcription	Brain Substantia Nigra	brain
21	chr10:93565800-93577800	Weak transcription	Right Ventricle	heart
22	chr10:93565800-93578200	Weak transcription	Gastric	stomach
23	chr10:93565800-93578400	Weak transcription	Brain Angular Gyrus	brain
24	chr10:93565800-93579800	Weak transcription	Small Intestine	intestine
25	chr10:93567200-93624200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:93567600-93579800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr10:93569200-93626800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:93570000-93608000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:93570800-93573200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:93570800-93625000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:93570800-93626000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:93570800-93626000	Strong transcription	Dnd41	blood
33	chr10:93571000-93580800	Weak transcription	Fetal Intestine Small	intestine
34	chr10:93571000-93623200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:93571000-93624000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:93571000-93625800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr10:93571200-93574400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:93571200-93575200	Strong transcription	HSMM	muscle
39	chr10:93571200-93578400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr10:93571200-93580000	Weak transcription	Pancreas	Pancrea
41	chr10:93571200-93626400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr10:93571400-93592800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:93571400-93626400	Strong transcription	Liver	Liver
44	chr10:93571400-93626400	Strong transcription	Fetal Thymus	thymus
45	chr10:93571600-93575600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:93571600-93581400	Weak transcription	Spleen	Spleen
47	chr10:93572000-93579200	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr10:93572000-93589600	Strong transcription	Primary neutrophils fromperipheralblood	blood
49	chr10:93572000-93626200	Strong transcription	Rectal Mucosa Donor 31	rectum
50	chr10:93572000-93626400	Strong transcription	Primary monocytes fromperipheralblood	blood

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