Variant report

Variant	rs6583789
Chromosome Location	chr10:93645541-93645542
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10881986	0.82[ASN][1000 genomes]
rs11186694	0.84[AMR][1000 genomes]
rs11186699	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12359353	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1538831	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1630388	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1770469	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1770474	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1772187	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2259094	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2259287	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2259659	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2260773	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2261029	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2261035	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4565819	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7083959	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7089122	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72823162	0.81[EUR][1000 genomes]
rs7919191	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9420573	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7491	chr10:93626192-93671694	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1842657	chr10:93634155-93668663	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6583789	TNKS2	cis	Thyroid	GTEx
rs6583789	TNKS2-AS1	cis	Thyroid	GTEx

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93643000-93645600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:93643000-93645800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:93643000-93645800	Enhancers	Fetal Brain Male	brain
4	chr10:93643400-93645600	Enhancers	Brain Substantia Nigra	brain
5	chr10:93643600-93646800	Weak transcription	Esophagus	oesophagus
6	chr10:93643800-93645800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr10:93643800-93645800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:93643800-93646800	Weak transcription	Aorta	Aorta
9	chr10:93643800-93646800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:93643800-93647000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr10:93643800-93647000	Weak transcription	Lung	lung
12	chr10:93643800-93647000	Weak transcription	Pancreas	Pancrea
13	chr10:93643800-93647000	Weak transcription	HSMM	muscle
14	chr10:93644000-93645600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr10:93644000-93645600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:93644000-93645600	Enhancers	Fetal Heart	heart
17	chr10:93644000-93645800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr10:93644000-93645800	Enhancers	Fetal Brain Female	brain
19	chr10:93644000-93646800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:93644000-93646800	Weak transcription	Fetal Kidney	kidney
21	chr10:93644000-93646800	Weak transcription	Right Atrium	heart
22	chr10:93644000-93647000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr10:93644000-93647000	Weak transcription	HMEC	breast
24	chr10:93644000-93647000	Weak transcription	NHDF-Ad	bronchial
25	chr10:93644200-93645600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:93644200-93645800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr10:93644200-93646800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr10:93644200-93646800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:93644200-93646800	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:93644200-93646800	Weak transcription	Brain Anterior Caudate	brain
31	chr10:93644200-93646800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr10:93644200-93646800	Weak transcription	NH-A	brain
33	chr10:93644200-93647000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr10:93644200-93647000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr10:93644200-93647200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:93644200-93647200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:93644200-93648600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:93644400-93646800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr10:93644400-93646800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:93644400-93646800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:93644400-93646800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr10:93644400-93646800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr10:93644400-93646800	Weak transcription	Adipose Nuclei	Adipose
44	chr10:93644400-93646800	Weak transcription	Brain Angular Gyrus	brain
45	chr10:93644400-93646800	Weak transcription	Brain Hippocampus Middle	brain
46	chr10:93644400-93646800	Weak transcription	Colon Smooth Muscle	Colon
47	chr10:93644400-93646800	Weak transcription	Fetal Muscle Leg	muscle
48	chr10:93644400-93646800	Weak transcription	Fetal Stomach	stomach
49	chr10:93644400-93646800	Weak transcription	Psoas Muscle	Psoas
50	chr10:93644400-93646800	Weak transcription	NHLF	lung

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