Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:86452591..86454803-chr6:86455984..86458666,2	K562	blood:
2	chr6:86385780..86390752-chr6:86454284..86460508,14	MCF-7	breast:
3	chr6:86385559..86389252-chr6:86453678..86456475,4	MCF-7	breast:
4	chr6:86351009..86353966-chr6:86455070..86459127,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203875	Chromatin interaction
ENSG00000135316	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16876414	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16876418	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1932224	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1960942	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2095483	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2166666	0.93[ASN][1000 genomes]
rs4707220	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58371643	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58373384	1.00[EUR][1000 genomes]
rs58581552	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58609266	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60365088	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6910480	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6910486	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72493076	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73487436	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7753603	1.00[EUR][1000 genomes]
rs7759478	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7773518	1.00[EUR][1000 genomes]
rs9717294	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028293	chr6:86353958-86778912	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
2	nsv538350	chr6:86353958-86778912	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	100 gene(s)	inside rSNPs	diseases
3	nsv886335	chr6:86445651-86669361	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:86455600-86457400	Weak transcription	HepG2	liver
2	chr6:86455600-86458800	Weak transcription	Fetal Intestine Large	intestine
3	chr6:86455600-86460800	Weak transcription	Fetal Intestine Small	intestine

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