Variant report
| Variant | rs4707220 |
|---|---|
| Chromosome Location | chr6:86437339-86437340 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:86387465..86389372-chr6:86436814..86438832,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000217334 | TF binding region |
| ENSG00000203875 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1118698 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16876385 | 0.80[CHB][hapmap] |
| rs16876414 | 0.87[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs16876418 | 0.86[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1793 | 0.80[CHB][hapmap] |
| rs1932224 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1960942 | 1.00[EUR][1000 genomes] |
| rs2095483 | 0.87[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4707213 | 0.80[CHB][hapmap] |
| rs58371643 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs58581552 | 1.00[EUR][1000 genomes] |
| rs58609266 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60365088 | 1.00[EUR][1000 genomes] |
| rs6910480 | 1.00[EUR][1000 genomes] |
| rs6910486 | 1.00[EUR][1000 genomes] |
| rs72493076 | 1.00[EUR][1000 genomes] |
| rs73487436 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7759478 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7771577 | 0.80[CHB][hapmap] |
| rs7773518 | 1.00[EUR][1000 genomes] |
| rs9717294 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028293 | chr6:86353958-86778912 | Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
| 2 | nsv538350 | chr6:86353958-86778912 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
