Variant report

Variant	rs11187085
Chromosome Location	chr10:94354712-94354713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:94351268..94354735-chr10:94355145..94359396,3	K562	blood:
2	chr10:94354555..94356987-chr10:94371301..94373005,2	MCF-7	breast:
3	chr10:94327650..94337583-chr10:94349444..94356782,22	K562	blood:
4	chr10:94349533..94356622-chr10:94447410..94453498,11	K562	blood:
5	chr10:94353654..94355559-chr10:94371122..94372777,2	K562	blood:
6	chr10:94353767..94355428-chr10:94415113..94417602,2	MCF-7	breast:
7	chr10:94353254..94355165-chr10:94355229..94358982,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184111	Chromatin interaction
ENSG00000152804	Chromatin interaction
ENSG00000119912	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11815573	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901599	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56111269	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6583828	1.00[ASN][1000 genomes]
rs6583831	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7070990	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7079583	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7089765	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7093043	0.94[ASN][1000 genomes]
rs7095585	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94350600-94354800	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr10:94350600-94355000	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr10:94350600-94355200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:94350600-94355400	Active TSS	GM12878-XiMat	blood
5	chr10:94350600-94355600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:94350600-94355800	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr10:94350800-94354800	Active TSS	Fetal Brain Female	brain
8	chr10:94350800-94355000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:94350800-94355600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:94350800-94355800	Active TSS	Thymus	Thymus
11	chr10:94351000-94354800	Active TSS	H1 Cell Line	embryonic stem cell
12	chr10:94351000-94354800	Active TSS	HSMM	muscle
13	chr10:94351000-94355000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:94351000-94355200	Active TSS	H9 Cell Line	embryonic stem cell
15	chr10:94351000-94355600	Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr10:94351000-94356600	Active TSS	K562	blood
17	chr10:94351200-94354800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:94351200-94354800	Active TSS	Fetal Kidney	kidney
19	chr10:94351200-94354800	Active TSS	A549	lung
20	chr10:94351200-94355000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:94351200-94355000	Active TSS	Fetal Intestine Large	intestine
22	chr10:94351200-94355600	Active TSS	iPS-18 Cell Line	embryonic stem cell
23	chr10:94351400-94354800	Active TSS	Fetal Intestine Small	intestine
24	chr10:94351400-94355000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:94352000-94354800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:94352000-94355200	Active TSS	Brain Germinal Matrix	brain
27	chr10:94352200-94355400	Active TSS	Hela-S3	cervix
28	chr10:94352400-94355000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:94352600-94354800	Active TSS	Fetal Muscle Leg	muscle
30	chr10:94352600-94355000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:94352600-94355000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr10:94352600-94355000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:94353200-94354800	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr10:94353200-94354800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr10:94353200-94354800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr10:94353400-94355200	Active TSS	HepG2	liver
37	chr10:94353600-94354800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:94353600-94354800	Flanking Active TSS	HUVEC	blood vessel
39	chr10:94353600-94355800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:94353800-94354800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:94353800-94354800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr10:94353800-94354800	Flanking Active TSS	NH-A	brain
44	chr10:94353800-94355200	Enhancers	Primary B cells from cord blood	blood
45	chr10:94353800-94355200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr10:94353800-94355200	Active TSS	NHLF	lung
47	chr10:94353800-94355600	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr10:94354000-94355200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:94354000-94355800	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr10:94354000-94356200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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