Variant report

Variant	rs56111269
Chromosome Location	chr10:94379628-94379629
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94372741..94374376-chr10:94378690..94380329,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11187085	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11815573	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2901599	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6583828	0.96[ASN][1000 genomes]
rs6583831	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7070990	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7079583	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7089765	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7093043	0.91[ASN][1000 genomes]
rs7095585	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94353600-94403800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:94354000-94420000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:94354200-94416000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr10:94356800-94385600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:94362000-94381200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:94362000-94389400	Weak transcription	NHLF	lung
7	chr10:94362000-94399800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:94363600-94410200	Weak transcription	Fetal Kidney	kidney
9	chr10:94364000-94390600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr10:94364000-94416400	Strong transcription	Dnd41	blood
11	chr10:94364200-94417400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:94364400-94403800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:94364400-94415200	Weak transcription	Fetal Heart	heart
14	chr10:94364800-94383600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:94365000-94385400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:94365000-94395200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:94365600-94390600	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr10:94365600-94415600	Strong transcription	Fetal Thymus	thymus
19	chr10:94365800-94382600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:94365800-94390400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:94366000-94386400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:94366000-94390600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:94366000-94409600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr10:94366200-94390600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:94366400-94388600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:94366800-94390600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr10:94367200-94411400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr10:94367400-94394000	Weak transcription	Fetal Intestine Large	intestine
29	chr10:94367400-94399600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr10:94368600-94386200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:94371000-94408600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr10:94371000-94414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:94371000-94417000	Weak transcription	Primary B cells from cord blood	blood
34	chr10:94371200-94386000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr10:94371600-94390600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr10:94371800-94384400	Strong transcription	HepG2	liver
37	chr10:94371800-94408800	Weak transcription	Fetal Brain Female	brain
38	chr10:94372600-94380400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:94372600-94384200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:94373200-94385400	Weak transcription	Esophagus	oesophagus
41	chr10:94373600-94381600	Weak transcription	Lung	lung
42	chr10:94373600-94399800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:94374800-94380200	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:94374800-94380400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr10:94374800-94380400	Weak transcription	Osteobl	bone
46	chr10:94374800-94380600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr10:94374800-94380600	Weak transcription	K562	blood
48	chr10:94374800-94380800	Weak transcription	Primary hematopoietic stem cells	blood
49	chr10:94374800-94393000	Weak transcription	NHEK	skin
50	chr10:94374800-94410400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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