Variant report

Variant	rs1118709
Chromosome Location	chr5:108626720-108626721
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10038277	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10038365	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10052140	0.81[AMR][1000 genomes]
rs10063202	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10067272	0.81[AMR][1000 genomes]
rs1117583	1.00[ASN][1000 genomes]
rs11241001	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11241002	1.00[ASN][1000 genomes]
rs11739970	1.00[ASN][1000 genomes]
rs11740036	0.97[ASN][1000 genomes]
rs12515066	0.97[ASN][1000 genomes]
rs12515084	0.96[ASN][1000 genomes]
rs12519126	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12520192	0.95[ASN][1000 genomes]
rs12520883	0.98[ASN][1000 genomes]
rs12651735	0.99[ASN][1000 genomes]
rs12652412	0.98[ASN][1000 genomes]
rs12655632	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1592804	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1592805	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1592808	0.81[AMR][1000 genomes]
rs1833565	0.82[AMR][1000 genomes]
rs1833566	0.84[ASN][1000 genomes]
rs1833570	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1833573	0.95[ASN][1000 genomes]
rs1988840	0.97[ASN][1000 genomes]
rs2080857	1.00[ASN][1000 genomes]
rs2161163	0.83[AMR][1000 genomes]
rs2193982	1.00[ASN][1000 genomes]
rs2416201	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2416203	1.00[ASN][1000 genomes]
rs58008430	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60191921	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6594368	0.98[ASN][1000 genomes]
rs6866681	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6882785	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6885647	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73217809	0.84[ASN][1000 genomes]
rs7700459	0.82[ASN][1000 genomes]
rs7701445	0.98[ASN][1000 genomes]
rs7716940	0.98[ASN][1000 genomes]
rs7718436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7718917	1.00[ASN][1000 genomes]
rs7735608	0.84[ASN][1000 genomes]
rs7736180	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2763481	chr5:108605390-108693696	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108623800-108630200	Weak transcription	Pancreas	Pancrea
2	chr5:108625600-108627200	Weak transcription	Liver	Liver
3	chr5:108625800-108635000	Weak transcription	Aorta	Aorta
4	chr5:108626400-108627000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:108626600-108627600	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links