Variant report

Variant	rs10052140
Chromosome Location	chr5:108611556-108611557
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10038277	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10038365	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10039717	0.88[ASN][1000 genomes]
rs10063202	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10067272	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1118709	0.81[AMR][1000 genomes]
rs11241001	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11958988	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12515227	0.84[ASN][1000 genomes]
rs12519126	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12655632	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1363215	0.89[ASN][1000 genomes]
rs1477285	0.89[ASN][1000 genomes]
rs1592804	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1592805	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1592808	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17161649	0.90[ASN][1000 genomes]
rs1833565	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833566	0.96[ASN][1000 genomes]
rs1833570	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1968228	0.89[ASN][1000 genomes]
rs2016908	0.90[ASN][1000 genomes]
rs2080856	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2161163	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2416201	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58008430	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs60191921	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6594364	0.90[ASN][1000 genomes]
rs6866681	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6882785	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6885647	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73217809	0.96[ASN][1000 genomes]
rs7700459	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7709622	0.89[ASN][1000 genomes]
rs7718436	0.81[AMR][1000 genomes]
rs7727982	0.90[ASN][1000 genomes]
rs7731648	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7735608	0.96[ASN][1000 genomes]
rs7736180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7737548	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9326765	0.84[ASN][1000 genomes]
rs983099	0.90[ASN][1000 genomes]
rs9968607	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv4955	chr5:108577946-108611852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv508375	chr5:108587628-108624046	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2763481	chr5:108605390-108693696	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108601800-108615000	Weak transcription	Pancreas	Pancrea
2	chr5:108611400-108611800	Enhancers	Muscle Satellite Cultured Cells	--

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