Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108564779..108567807-chr5:108568238..108570638,3	K562	blood:

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10038277	0.87[ASN][1000 genomes]
rs10038365	0.87[ASN][1000 genomes]
rs10039717	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10052140	0.84[ASN][1000 genomes]
rs10063202	0.83[ASN][1000 genomes]
rs10067272	0.84[ASN][1000 genomes]
rs11241001	0.83[ASN][1000 genomes]
rs11958988	0.83[ASN][1000 genomes]
rs12515227	1.00[ASN][1000 genomes]
rs12519126	0.87[ASN][1000 genomes]
rs12655632	0.87[ASN][1000 genomes]
rs1363215	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1477285	0.92[ASN][1000 genomes]
rs1592804	0.87[ASN][1000 genomes]
rs1592805	0.87[ASN][1000 genomes]
rs1592808	0.83[ASN][1000 genomes]
rs17161649	0.93[ASN][1000 genomes]
rs1833565	0.84[ASN][1000 genomes]
rs1833566	0.87[ASN][1000 genomes]
rs1833570	0.87[ASN][1000 genomes]
rs1968228	0.92[ASN][1000 genomes]
rs2016908	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2161163	0.84[ASN][1000 genomes]
rs2416201	0.85[ASN][1000 genomes]
rs58008430	0.87[ASN][1000 genomes]
rs60191921	0.87[ASN][1000 genomes]
rs6594364	0.93[ASN][1000 genomes]
rs6866681	0.86[ASN][1000 genomes]
rs6882785	0.87[ASN][1000 genomes]
rs6885647	0.86[ASN][1000 genomes]
rs73217809	0.87[ASN][1000 genomes]
rs7700459	0.81[ASN][1000 genomes]
rs7709622	0.92[ASN][1000 genomes]
rs7727982	0.93[ASN][1000 genomes]
rs7735608	0.87[ASN][1000 genomes]
rs7736180	0.83[ASN][1000 genomes]
rs7737548	0.84[ASN][1000 genomes]
rs983099	0.91[ASN][1000 genomes]
rs9968607	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108567400-108570200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: