Variant report

Variant	rs1363215
Chromosome Location	chr5:108572971-108572972
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108572770..108575562-chr5:108575824..108578340,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10038277	0.92[ASN][1000 genomes]
rs10038365	0.93[ASN][1000 genomes]
rs10039717	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10052140	0.89[ASN][1000 genomes]
rs10063202	0.88[ASN][1000 genomes]
rs10067272	0.89[ASN][1000 genomes]
rs11241001	0.89[ASN][1000 genomes]
rs11958988	0.88[ASN][1000 genomes]
rs12515227	0.94[ASN][1000 genomes]
rs12519126	0.92[ASN][1000 genomes]
rs12655632	0.93[ASN][1000 genomes]
rs1477285	0.98[ASN][1000 genomes]
rs1592804	0.92[ASN][1000 genomes]
rs1592805	0.92[ASN][1000 genomes]
rs1592808	0.88[ASN][1000 genomes]
rs17161649	0.99[ASN][1000 genomes]
rs1833565	0.89[ASN][1000 genomes]
rs1833566	0.93[ASN][1000 genomes]
rs1833570	0.92[ASN][1000 genomes]
rs1968228	0.98[ASN][1000 genomes]
rs2016908	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2080856	0.80[ASN][1000 genomes]
rs2161163	0.89[ASN][1000 genomes]
rs2416201	0.91[ASN][1000 genomes]
rs58008430	0.93[ASN][1000 genomes]
rs60191921	0.93[ASN][1000 genomes]
rs6594364	0.99[ASN][1000 genomes]
rs6866681	0.91[ASN][1000 genomes]
rs6882785	0.92[ASN][1000 genomes]
rs6885647	0.92[ASN][1000 genomes]
rs73217809	0.93[ASN][1000 genomes]
rs7700459	0.87[ASN][1000 genomes]
rs7709622	0.98[ASN][1000 genomes]
rs7727982	0.99[ASN][1000 genomes]
rs7731648	0.85[ASN][1000 genomes]
rs7735608	0.93[ASN][1000 genomes]
rs7736180	0.88[ASN][1000 genomes]
rs7737548	0.89[ASN][1000 genomes]
rs9326765	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs983099	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.97[ASN][1000 genomes]
rs9968607	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108572200-108573200	ZNF genes & repeats	Aorta	Aorta
2	chr5:108572200-108573200	ZNF genes & repeats	Liver	Liver
3	chr5:108572200-108574200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:108572800-108573200	Weak transcription	Stomach Smooth Muscle	stomach

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