Variant report

Variant	rs983099
Chromosome Location	chr5:108584878-108584879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:19215988..19216797-chr5:108584709..108585530,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000181035	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10038277	0.93[ASN][1000 genomes]
rs10038365	0.94[ASN][1000 genomes]
rs10039717	0.96[ASN][1000 genomes]
rs10052140	0.90[ASN][1000 genomes]
rs10063202	0.89[ASN][1000 genomes]
rs10067272	0.90[ASN][1000 genomes]
rs11241001	0.90[ASN][1000 genomes]
rs11958988	0.89[ASN][1000 genomes]
rs12515227	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12519126	0.93[ASN][1000 genomes]
rs12655632	0.94[ASN][1000 genomes]
rs1363215	0.97[ASN][1000 genomes]
rs1477285	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1592804	0.93[ASN][1000 genomes]
rs1592805	0.93[ASN][1000 genomes]
rs1592808	0.89[ASN][1000 genomes]
rs17161649	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1833565	0.90[ASN][1000 genomes]
rs1833566	0.94[ASN][1000 genomes]
rs1833570	0.93[ASN][1000 genomes]
rs1968228	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2016908	0.98[ASN][1000 genomes]
rs2080856	0.81[ASN][1000 genomes]
rs2161163	0.90[ASN][1000 genomes]
rs2416201	0.92[ASN][1000 genomes]
rs58008430	0.94[ASN][1000 genomes]
rs60191921	0.94[ASN][1000 genomes]
rs6594364	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6866681	0.92[ASN][1000 genomes]
rs6882785	0.93[ASN][1000 genomes]
rs6885647	0.92[ASN][1000 genomes]
rs73217809	0.94[ASN][1000 genomes]
rs7700459	0.88[ASN][1000 genomes]
rs7709622	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7727982	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7731648	0.86[ASN][1000 genomes]
rs7735608	0.94[ASN][1000 genomes]
rs7736180	0.89[ASN][1000 genomes]
rs7737548	0.90[ASN][1000 genomes]
rs9326765	0.91[ASN][1000 genomes]
rs9968607	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv4955	chr5:108577946-108611852	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108584200-108585000	Enhancers	Placenta	Placenta
2	chr5:108584200-108585200	Enhancers	Fetal Muscle Leg	muscle

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