Variant report

Variant	rs17161649
Chromosome Location	chr5:108576601-108576602
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108572770..108575562-chr5:108575824..108578340,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10038277	0.93[ASN][1000 genomes]
rs10038365	0.94[ASN][1000 genomes]
rs10039717	0.97[ASN][1000 genomes]
rs10052140	0.90[ASN][1000 genomes]
rs10063202	0.89[ASN][1000 genomes]
rs10067272	0.90[ASN][1000 genomes]
rs11241001	0.90[ASN][1000 genomes]
rs11958988	0.89[ASN][1000 genomes]
rs12515227	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12519126	0.93[ASN][1000 genomes]
rs12655632	0.94[ASN][1000 genomes]
rs1363215	0.99[ASN][1000 genomes]
rs1477285	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1592804	0.93[ASN][1000 genomes]
rs1592805	0.93[ASN][1000 genomes]
rs1592808	0.89[ASN][1000 genomes]
rs1833565	0.90[ASN][1000 genomes]
rs1833566	0.94[ASN][1000 genomes]
rs1833570	0.93[ASN][1000 genomes]
rs1968228	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2016908	1.00[ASN][1000 genomes]
rs2080856	0.81[ASN][1000 genomes]
rs2161163	0.90[ASN][1000 genomes]
rs2416201	0.92[ASN][1000 genomes]
rs58008430	0.94[ASN][1000 genomes]
rs60191921	0.94[ASN][1000 genomes]
rs6594364	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6864796	0.95[AFR][1000 genomes]
rs6866681	0.92[ASN][1000 genomes]
rs6881141	0.91[AFR][1000 genomes]
rs6882785	0.93[ASN][1000 genomes]
rs6885647	0.92[ASN][1000 genomes]
rs73217809	0.94[ASN][1000 genomes]
rs7700459	0.88[ASN][1000 genomes]
rs7709622	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7727982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731648	0.86[ASN][1000 genomes]
rs7735608	0.94[ASN][1000 genomes]
rs7736180	0.89[ASN][1000 genomes]
rs7737548	0.90[ASN][1000 genomes]
rs9326765	0.93[ASN][1000 genomes]
rs983099	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9968607	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108573200-108580800	Weak transcription	Aorta	Aorta
2	chr5:108573200-108582200	Weak transcription	Liver	Liver
3	chr5:108574800-108577200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:108575600-108581800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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