Variant report
| Variant | rs11187140 |
|---|---|
| Chromosome Location | chr10:94466910-94466911 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000138190 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10748582 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10786053 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10882104 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10882105 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs10882106 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1112718 | 0.90[EUR][1000 genomes] |
| rs11187141 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11187143 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11187144 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11187149 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs1832886 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2153827 | 0.81[EUR][1000 genomes] |
| rs2901609 | 0.87[EUR][1000 genomes] |
| rs34744311 | 0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35978445 | 0.82[EUR][1000 genomes] |
| rs4933736 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7087591 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7898054 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7923837 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7923866 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3446249 | chr10:94374508-94549394 | Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv825517 | chr10:94397149-94472509 | Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv825518 | chr10:94403446-94467700 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:94459800-94474000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr10:94462400-94473400 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
