Variant report

Variant	rs2901609
Chromosome Location	chr10:94475111-94475112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10748582	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10786053	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10882104	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882105	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10882106	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1112718	0.86[EUR][1000 genomes]
rs11187140	0.87[EUR][1000 genomes]
rs11187141	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187143	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187144	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11187149	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1832886	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34744311	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4933736	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7087591	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7898054	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7923837	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7923866	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94471000-94477200	Enhancers	Primary B cells from cord blood	blood
2	chr10:94471200-94481200	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:94472600-94475600	Weak transcription	Liver	Liver
4	chr10:94474200-94475200	Enhancers	Pancreas	Pancrea
5	chr10:94475000-94476000	Bivalent Enhancer	HepG2	liver
6	chr10:94475000-94476600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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