Variant report

Variant	rs11187653
Chromosome Location	chr10:95530204-95530205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:95522871..95524463-chr10:95528505..95530583,2	MCF-7	breast:
2	chr10:95525298..95527344-chr10:95529227..95532168,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11187650	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11187652	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11187655	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12258847	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12265881	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58308282	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60065529	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7067881	0.95[EUR][1000 genomes]
rs74150343	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95520800-95536400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:95521200-95533600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:95526000-95530400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr10:95526600-95533000	Enhancers	Liver	Liver
6	chr10:95528000-95530400	Weak transcription	A549	lung
7	chr10:95528200-95535200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:95528200-95536600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:95529000-95530400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:95529400-95530400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr10:95529400-95530600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr10:95529600-95530400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr10:95529600-95530400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:95529600-95530400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:95529600-95530400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:95529800-95530600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr10:95529800-95530600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:95530000-95530600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr10:95530000-95533000	Weak transcription	Brain Anterior Caudate	brain
21	chr10:95530000-95536600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:95530200-95530400	Bivalent/Poised TSS	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links