Variant report

Variant	rs12258847
Chromosome Location	chr10:95532016-95532017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11187650	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11187652	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11187653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11187655	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12265881	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58308282	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60065529	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7067881	0.95[EUR][1000 genomes]
rs74150343	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3346948	chr10:95421957-95532625	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1817213	chr10:95531345-95561397	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1846291	chr10:95531345-95561397	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95520800-95536400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:95521200-95533600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:95523200-95541800	Weak transcription	Brain Substantia Nigra	brain
4	chr10:95526600-95533000	Enhancers	Liver	Liver
5	chr10:95528200-95535200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:95528200-95536600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:95528600-95559600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:95530000-95533000	Weak transcription	Brain Anterior Caudate	brain
9	chr10:95530000-95536600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:95530000-95554800	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:95530400-95533000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:95530400-95533000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:95530400-95533000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr10:95530400-95533400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:95530400-95533400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr10:95530400-95549400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:95530600-95536600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:95530600-95558000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:95531200-95535000	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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